RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA340009" and tax_phylum = "Candidatus Campbelliibacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Campbelliibacteriota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA340009 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1666864 1666864 PRJNA340009_P_NODE_47302_length_187_cov_15.942029_g46995_i0 PRJNA340009 47302 187 15.942029 29.81159423 Candidatus Campbellbacteria bacterium 2026716 Bacteria Bacteria 185 1.51e-42   NTclustered gi|1958034697|gb|CP064977.1| 2026716 g46995 i0 84.865 116.032085561497 185 26 99 2 3 187 450954 450772 MAG: Candidatus Campbellbacteria bacterium isolate EsbW_18-Q3-R4-48_MAXAC.283_fly_man chromosome, complete genome blastn 21698 185 1 Bacteria Bacteria candidate phyla   Candidatus Campbelliibacteriota         Candidatus Campbellbacteria bacterium
1667125 1667125 PRJNA340009_P_NODE_70922_length_163_cov_1.421053_g70615_i0 PRJNA340009 70922 163 1.421053 2.31631639 Candidatus Campbellbacteria bacterium 2026716 Bacteria Bacteria 84.2 4.82e-12   NTclustered gi|1958034697|gb|CP064977.1| 2026716 g70615 i0 85.542 0.987730061349693 83 9 50 3 5 85 449734 449815 MAG: Candidatus Campbellbacteria bacterium isolate EsbW_18-Q3-R4-48_MAXAC.283_fly_man chromosome, complete genome blastn 161 84.2 1 Bacteria Bacteria candidate phyla   Candidatus Campbelliibacteriota         Candidatus Campbellbacteria bacterium
12548710 12548710 PRJNA340009_P_NODE_79110_length_156_cov_6.242991_g78803_i0 PRJNA340009 79110 156 6.242991 9.73906596 Bacteria 2 Bacteria Bacteria 76.8 7.62e-10   NTclustered gi|1958034697|gb|CP064977.1| 2026716 g78803 i0 91.228 235.852564102564 57 4 36 1 59 114 450898 450842 MAG: Candidatus Campbellbacteria bacterium isolate EsbW_18-Q3-R4-48_MAXAC.283_fly_man chromosome, complete genome blastn 36793 76.8 1 Bacteria Bacteria candidate phyla   Candidatus Campbelliibacteriota         Candidatus Campbellbacteria bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;