RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA340009" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA340009 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1069964 1069964 PRJNA340009_P_NODE_24281_length_248_cov_6.703518_g23974_i0 PRJNA340009 24281 248 6.703518 16.62472464 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 60.2 1.34e-4   NTclustered gi|1280184590|gb|MG584560.1| 27996 g23974 i0 94.737 1.99193548387097 38 2 15 0 143 180 994 1031 Cytauxzoon felis isolate 10b internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 494 60.2 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Theileriidae Cytauxzoon Cytauxzoon felis
11871001 11871001 PRJNA340009_P_NODE_55750_length_175_cov_1.539683_g55443_i0 PRJNA340009 55750 175 1.539683 2.69444525 Plasmodium reichenowi 5854 SAR_Eukaryotes SAR_Eukaryotes 58.4 3.17e-4   NTclustered gi|1145258426|ref|XM_020114704.1| 5854 g55443 i0 94.595 0.211428571428571 37 2 21 0 17 53 1165 1201 Plasmodium reichenowi putative membrane protein partial mRNA blastn 37 58.4 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium reichenowi
14421326 14421326 PRJNA340009_P_NODE_75292_length_161_cov_2.732143_g74985_i0 PRJNA340009 75292 161 2.732143 4.39875023 Cryptosporidium ryanae 515981 SAR_Eukaryotes SAR_Eukaryotes 62.1 2.22e-5   NTclustered gi|2787713731|ref|XM_067342684.1| 515981 g74985 i0 94.872 0.242236024844721 39 2 24 0 13 51 558 596 Cryptosporidium ryanae 40S ribosomal protein S8 (FG386_003370), partial mRNA blastn 39 62.1 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium ryanae
21471821 21471821 PRJNA340009_P_NODE_54517_length_176_cov_14.275591_g54210_i0 PRJNA340009 54517 176 14.275591 25.12504016 Toxoplasma 5810 SAR_Eukaryotes SAR_Eukaryotes 87.9 4.07e-13   NTclustered gi|820701449|tpe|LN714501.1| 432359 g54210 i0 81.308 1.21590909090909 107 20 61 0 62 168 2409441 2409547 TPA_asm: Toxoplasma gondii VEG, chromosome chrXI, complete genome blastn 214 87.9 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Toxoplasma Toxoplasma gondii
23344230 23344230 PRJNA340009_P_NODE_50579_length_182_cov_5.120301_g50272_i0 PRJNA340009 50579 182 5.120301 9.31894782 Plasmodium chabaudi 5825 SAR_Eukaryotes SAR_Eukaryotes 117 5.41e-22   NTclustered gi|1027950138|ref|XM_016797486.1| 31271 g50272 i0 85.088 8.14835164835165 114 17 100 0 69 182 751 864 Plasmodium chabaudi chabaudi polyubiquitin (PCHAS_0612000), partial mRNA blastn 1483 117 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium chabaudi
24618056 24618056 PRJNA340009_P_NODE_18900_length_277_cov_0.864035_g18593_i0 PRJNA340009 18900 277 0.864035 2.39337695 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 411 3.649999999999999e-110   NTclustered gi|820695469|tpe|LN714488.1| 572307 g18593 i0 94.096 28.3682310469314 271 15 100 1 1 271 301604 301873 TPA_asm: Neospora caninum Liverpool, unplaced_1, complete genome blastn 7858 411 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;