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contig_metadata

31 rows where analysis = "blastn", bioproject = "PRJNA340009" and tax_clade = "Amoebozoa"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 31 ✖

bioproject 1

  • PRJNA340009 · 31 ✖

analysis 1

  • blastn · 31 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
392188 392188 PRJNA340009_P_NODE_37601_length_206_cov_6.363057_g37294_i0 PRJNA340009 37601 206 6.363057 13.10789742 Saccamoeba sp. SC007 266052 Tubulinea other_Eukaryota 198 2.19e-46   NTclustered gi|45386047|gb|AY549565.1| 266052 g37294 i0 97.414 53.126213592233 116 3 56 0 91 206 418 303 Saccamoeba sp. SC007 18S ribosomal RNA gene, partial sequence blastn 10944 198 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba sp. SC007
4219337 4219337 PRJNA340009_P_NODE_30744_length_224_cov_50.091429_g30437_i0 PRJNA340009 30744 224 50.091429 112.20480096 uncultured Rhizamoeba 1260765 Tubulinea other_Eukaryota 165 2.4500000000000002e-36   NTclustered gi|511487963|gb|JX898537.1| 1260765 g30437 i0 85.03 5.4375 167 20 74 5 47 211 439 276 Uncultured Rhizamoeba clone HCA_D03-34 28S ribosomal RNA gene, partial sequence blastn 1218 165 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae   uncultured Rhizamoeba
5495558 5495558 PRJNA340009_P_NODE_18125_length_282_cov_0.875536_g17818_i0 PRJNA340009 18125 282 0.875536 2.46901152 Dictyostelium discoideum 44689 Evosea other_Eukaryota 52.8 0.026   NTclustered gi|66806448|ref|XM_631855.1| 352472 g17818 i0 100 0.099290780141844 28 0 10 0 20 47 4672 4645 Dictyostelium discoideum AX4 leucine-rich repeat-containing protein (DDB_G0288031) mRNA, complete cds blastn 28 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
5496088 5496088 PRJNA340009_P_NODE_65805_length_165_cov_2.637931_g65498_i0 PRJNA340009 65805 165 2.637931 4.35258615 Fuligo septica 159720 Evosea other_Eukaryota 287 3.47e-73   NTclustered gi|37515398|emb|AJ584697.1| 159720 g65498 i0 98.193 1.00606060606061 166 0 100 2 1 165 6511 6348 Fuligo septica 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2 and 28S rRNA gene, isolate NY-1 blastn 166 287 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Fuligo Fuligo septica
6769848 6769848 PRJNA340009_P_NODE_44986_length_191_cov_2.859155_g44679_i0 PRJNA340009 44986 191 2.859155 5.46098605 Tubulinea sp. 4388 1216001 Tubulinea other_Eukaryota 222 1.18e-53   NTclustered gi|399764265|gb|JQ271776.1| 1216001 g44679 i0 98.425 4.24083769633508 127 1 93 1 1 127 935 810 Tubulinea sp. 4388 18S ribosomal RNA gene, partial sequence blastn 810 222 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea sp. 4388
6770026 6770026 PRJNA340009_P_NODE_60666_length_168_cov_2.218487_g60359_i0 PRJNA340009 60666 168 2.218487 3.72705816 Coremiostelium polycephalum 142831 Evosea other_Eukaryota 54.7 0.004   NTclustered gi|1057487525|gb|KX539326.1| 142831 g60359 i0 100 0.172619047619048 29 0 17 0 130 158 695 723 Dictyostelium polycephalum strain MY1-1 phosphoenolpyruvate carboxylase gene, complete cds blastn 29 54.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales   Coremiostelium Coremiostelium polycephalum
7447832 7447832 PRJNA340009_P_NODE_18286_length_280_cov_257.974026_g17979_i0 PRJNA340009 18286 280 257.974026 722.3272728 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 484 2.15e-132   NTclustered gi|441475833|emb|FN562425.4| 688089 g17979 i0 98.545 14.7357142857143 275 3 98 1 4 277 552 278 Amoebozoa sp. SZA36 18S rRNA gene, isolate SZA36 blastn 4126 484 1 Eukaryota Amoebozoa             Amoebozoa sp. SZA36
8045898 8045898 PRJNA340009_P_NODE_8347_length_389_cov_5.755882_g8040_i0 PRJNA340009 8347 389 5.755882 22.39038098 Fuligo septica 159720 Evosea other_Eukaryota 688 0   NTclustered gi|37515398|emb|AJ584697.1| 159720 g8040 i0 98.715 30.0205655526992 389 2 100 3 1 389 6269 5884 Fuligo septica 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2 and 28S rRNA gene, isolate NY-1 blastn 11678 688 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Fuligo Fuligo septica
10595582 10595582 PRJNA340009_P_NODE_1289_length_828_cov_7.105263_g1037_i0 PRJNA340009 1289 828 7.105263 58.83157764 Physarum polycephalum 5791 Evosea other_Eukaryota 93.5 4.91e-14   NTclustered gi|11466223|ref|NC_002508.1| 5791 g1037 i0 84.783 0.111111111111111 92 14 11 0 730 821 59801 59710 Physarum polycephalum mitochondrion, complete genome blastn 92 93.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
10595676 10595676 PRJNA340009_P_NODE_19889_length_270_cov_12.592760_g19582_i0 PRJNA340009 19889 270 12.59276 34.000452 Fuligo septica 159720 Evosea other_Eukaryota 394 3.57e-105   NTclustered gi|37515398|emb|AJ584697.1| 159720 g19582 i0 100 2.93333333333333 213 0 79 0 1 213 13805 14017 Fuligo septica 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2 and 28S rRNA gene, isolate NY-1 blastn 792 394 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Fuligo Fuligo septica
10596043 10596043 PRJNA340009_P_NODE_54309_length_177_cov_1.539062_g54002_i0 PRJNA340009 54309 177 1.539062 2.72413974 Physarum polycephalum 5791 Evosea other_Eukaryota 182 1.83e-41   NTclustered gi|326632071|gb|HQ849406.1| 5791 g54002 i0 88.158 0.858757062146893 152 18 86 0 3 154 1111 1262 Physarum polycephalum strain M3CVIII NADH dehydrogenase subunit 4 (nad4) mRNA, complete cds; mitochondrial blastn 152 182 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
11273114 11273114 PRJNA340009_P_NODE_14729_length_308_cov_3.741313_g14422_i0 PRJNA340009 14729 308 3.741313 11.52324404 Fuligo 159719 Evosea other_Eukaryota 551 2.3299999999999993e-152   NTclustered gi|2319112839|gb|KJ545570.2| 947841 g14422 i0 99.668 97.7922077922078 301 1 98 0 1 301 765 465 Fuligo septica var. rufa strain MA-Fungi 42182 small subunit ribosomal RNA gene, partial sequence blastn 30120 556 0.991007194244604 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Fuligo Fuligo septica
13145642 13145642 PRJNA340009_P_NODE_28331_length_232_cov_10.622951_g28024_i0 PRJNA340009 28331 232 10.622951 24.64524632 Physarum polycephalum 5791 Evosea other_Eukaryota 357 3.9299999999999996e-94   NTclustered gi|326632058|gb|HQ849399.1| 5791 g28024 i0 94.397 41.3448275862069 232 13 100 0 1 232 801 570 Physarum polycephalum strain M3CVIII 23S large subunit ribosomal RNA, complete sequence; mitochondrial blastn 9592 357 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
14420893 14420893 PRJNA340009_P_NODE_34092_length_215_cov_2.457831_g33785_i0 PRJNA340009 34092 215 2.457831 5.28433665 Dictyostelium discoideum 44689 Evosea other_Eukaryota 52.8 0.019   NTclustered gi|66802307|ref|XM_629934.1| 352472 g33785 i0 100 0.130232558139535 28 0 13 0 22 49 46 19 Dictyostelium discoideum AX4 queuine tRNA-ribosyltransferase (qtrt1) mRNA, complete cds blastn 28 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
14421064 14421064 PRJNA340009_P_NODE_51172_length_181_cov_61.060606_g50865_i0 PRJNA340009 51172 181 61.060606 110.51969686 uncultured Rhizamoeba 1260765 Tubulinea other_Eukaryota 169 1.4599999999999998e-37   NTclustered gi|511487963|gb|JX898537.1| 1260765 g50865 i0 85.714 11.7955801104972 161 21 89 2 8 168 282 124 Uncultured Rhizamoeba clone HCA_D03-34 28S ribosomal RNA gene, partial sequence blastn 2135 169 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae   uncultured Rhizamoeba
14421385 14421385 PRJNA340009_P_NODE_8572_length_385_cov_6.068452_g8265_i0 PRJNA340009 8572 385 6.068452 23.3635402 Physarum polycephalum 5791 Evosea other_Eukaryota 366 1.1599999999999996e-96   NTclustered gi|326632058|gb|HQ849399.1| 5791 g8265 i0 83.969 4.06753246753247 393 51 100 10 1 385 1106 1494 Physarum polycephalum strain M3CVIII 23S large subunit ribosomal RNA, complete sequence; mitochondrial blastn 1566 366 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
15694463 15694463 PRJNA340009_P_NODE_10713_length_352_cov_1.594059_g10406_i0 PRJNA340009 10713 352 1.594059 5.61108768 Dictyostelium discoideum 44689 Evosea other_Eukaryota 52.8 0.033   NTclustered gi|66816568|ref|XM_637202.1| 352472 g10406 i0 100 0.0795454545454545 28 0 8 0 190 217 273 246 Dictyostelium discoideum AX4 hypothetical protein (DDB_G0278329) mRNA, complete cds blastn 28 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
15695085 15695085 PRJNA340009_P_NODE_64533_length_166_cov_0.871795_g64226_i0 PRJNA340009 64533 166 0.871795 1.4471797 Vexillifera bacillipedes 1105345 Discosea other_Eukaryota 307 2.69e-79   NTclustered gi|399764261|gb|JQ271772.1| 1105345 g64226 i0 100 98.1867469879518 166 0 100 0 1 166 398 563 Vexillifera bacillipedes strain 6HZM 18S ribosomal RNA gene, partial sequence blastn 16299 307 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera bacillipedes
16969623 16969623 PRJNA340009_P_NODE_4394_length_505_cov_7.440789_g4092_i0 PRJNA340009 4394 505 7.440789 37.57598445 Dictyostelium purpureum 5786 Evosea other_Eukaryota 60.2 2.95e-4   NTclustered gi|330840751|ref|XM_003292326.1| 5786 g4092 i0 94.737 0.283168316831683 38 2 8 0 447 484 226 189 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_5706), partial mRNA blastn 143 60.2 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
18243448 18243448 PRJNA340009_P_NODE_1215_length_846_cov_4.555834_g967_i0 PRJNA340009 1215 846 4.555834 38.54235564 Fuligo sp. BX-2002 211112 Evosea other_Eukaryota 1541 0   NTclustered gi|24711464|gb|AY145526.1| 211112 g967 i0 99.644 78.9314420803782 843 3 99 0 4 846 17 859 Fuligo sp. BX-2002 18S ribosomal RNA gene, partial sequence blastn 66776 1541 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Fuligo Fuligo sp. BX-2002
18244211 18244211 PRJNA340009_P_NODE_9755_length_365_cov_10.658228_g9448_i0 PRJNA340009 9755 365 10.658228 38.9025322 Fuligo septica 159720 Evosea other_Eukaryota 667 0   NTclustered gi|381139265|emb|HE655082.1| 159720 g9448 i0 100 70.9561643835616 361 0 99 0 5 365 2196 1836 Fuligo septica partial 28S rRNA gene, isolate IW-1 blastn 25899 667 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Fuligo Fuligo septica
19517670 19517670 PRJNA340009_P_NODE_12276_length_333_cov_1.077465_g11969_i0 PRJNA340009 12276 333 1.077465 3.58795845 Vannellidae sp. 2491907 Discosea other_Eukaryota 183 1.0699999999999998e-41   NTclustered gi|1523769315|gb|MH535957.1| 2491907 g11969 i0 77.681 49.3183183183183 345 48 100 22 1 333 338 665 Vannellidae sp. strain 151-1SVA_C2 18S ribosomal RNA gene, partial sequence; mitochondrial blastn 16423 183 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae   Vannellidae sp.
20196268 20196268 PRJNA340009_P_NODE_77616_length_160_cov_7.801802_g77309_i0 PRJNA340009 77616 160 7.801802 12.4828832 Hartmannellidae 5776 Tubulinea other_Eukaryota 195 2.08e-45   NTclustered gi|11527309|gb|AF293902.1|AF293902 136464 g77309 i0 99.074 61.0875 108 1 99 0 1 108 1453 1346 Saccamoeba limax small subunit ribosomal RNA gene, complete sequence blastn 9774 195 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba limax
20793364 20793364 PRJNA340009_P_NODE_21637_length_261_cov_1.707547_g21330_i0 PRJNA340009 21637 261 1.707547 4.45669767 Fuligo septica 159720 Evosea other_Eukaryota 477 3.3099999999999986e-130   NTclustered gi|37515398|emb|AJ584697.1| 159720 g21330 i0 99.617 48.8122605363985 261 1 100 0 1 261 9438 9698 Fuligo septica 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2 and 28S rRNA gene, isolate NY-1 blastn 12740 477 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Fuligo Fuligo septica
20793808 20793808 PRJNA340009_P_NODE_61937_length_167_cov_0.864407_g61630_i0 PRJNA340009 61937 167 0.864407 1.44355969 Fuligo septica 159720 Evosea other_Eukaryota 254 3.58e-63   NTclustered gi|15718367|emb|AJ312113.1| 159720 g61630 i0 99.286 17.6107784431138 140 1 84 0 6 145 1551 1690 Fuligo septica ITS1, 5.8S rRNA gene and ITS2, isolate NY1 blastn 2941 254 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Fuligo Fuligo septica
20793917 20793917 PRJNA340009_P_NODE_70937_length_163_cov_1.350877_g70630_i0 PRJNA340009 70937 163 1.350877 2.20192951 Dermamoeba algensis 242549 Discosea other_Eukaryota 285 1.23e-72   NTclustered gi|33946341|gb|AY294148.1| 242549 g70630 i0 98.758 79.1226993865031 161 0 98 2 1 159 943 1103 Dermamoeba algensis small subunit ribosomal RNA gene, partial sequence blastn 12897 285 1 Eukaryota Amoebozoa   Discosea   Longamoebia   Dermamoeba Dermamoeba algensis
22068380 22068380 PRJNA340009_P_NODE_19198_length_275_cov_1.030973_g18891_i0 PRJNA340009 19198 275 1.030973 2.83517575 Fuligo septica 159720 Evosea other_Eukaryota 503 5.809999999999998e-138   NTclustered gi|37515398|emb|AJ584697.1| 159720 g18891 i0 99.636 80.5890909090909 275 1 100 0 1 275 3440 3714 Fuligo septica 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2 and 28S rRNA gene, isolate NY-1 blastn 22162 503 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Fuligo Fuligo septica
23344421 23344421 PRJNA340009_P_NODE_6819_length_422_cov_7.825737_g6512_i0 PRJNA340009 6819 422 7.825737 33.02461014 Fuligo sp. BX-2002 211112 Evosea other_Eukaryota 756 0   NTclustered gi|24711464|gb|AY145526.1| 211112 g6512 i0 99.519 89.7630331753554 416 1 98 1 6 420 843 1258 Fuligo sp. BX-2002 18S ribosomal RNA gene, partial sequence blastn 37880 756 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Fuligo Fuligo sp. BX-2002
23344496 23344496 PRJNA340009_P_NODE_74959_length_162_cov_0.902655_g74652_i0 PRJNA340009 74959 162 0.902655 1.4623011 Vannella septentrionalis 197531 Discosea other_Eukaryota 222 9.709999999999999e-54   NTclustered gi|300078499|gb|GU001161.1| 197531 g74652 i0 92.857 93.6728395061728 154 9 94 2 1 152 1944 2097 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 15175 222 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
24021941 24021941 PRJNA340009_P_NODE_699_length_1078_cov_7.796890_g490_i0 PRJNA340009 699 1078 7.79689 84.0504742 Didymium 5792 Evosea other_Eukaryota 1192 0   NTclustered gi|2687|emb|X60210.1| 5793 g490 i0 87.349 31.6883116883117 1075 93 98 32 11 1065 2328 1277 D.iridis LSU rRNA gene blastn 34160 1203 0.990856192851205 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium iridis
24618329 24618329 PRJNA340009_P_NODE_39020_length_203_cov_3.142857_g38713_i0 PRJNA340009 39020 203 3.142857 6.37999971 Soliformovum expulsum 435423 Evosea other_Eukaryota 163 7.83e-36   NTclustered gi|260909293|gb|FJ766479.1| 435423 g38713 i0 86.986 6.61083743842365 146 17 71 2 1 145 988 844 Soliformovum expulsum culture-collection ATCC:48083 clone pool B 18S ribosomal RNA gene, partial sequence blastn 1342 163 1 Eukaryota Amoebozoa   Evosea Variosea Fractovitellida Soliformoviidae Soliformovum Soliformovum expulsum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;