RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA339266" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA339266 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6769084 6769084 PRJNA339266_S_NODE_15326_length_160_cov_12.000000_g15315_i0 PRJNA339266 15326 160 12 19.2 Schistosoma mansoni 6183 Platyhelminthes Platyhelminthes 241 2.6400000000000007e-59   NTclustered gi|56407631|gb|AY834397.1| 6183 g15315 i0 95.973 118.23125 149 5 93 1 12 160 160 13 Schistosoma mansoni IGF-I precursor-like gene, intron 2 blastn 18917 241 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma mansoni
13145101 13145101 PRJNA339266_S_NODE_1991_length_269_cov_6.840517_g1980_i0 PRJNA339266 1991 269 6.840517 18.40099073 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 161 3.92e-35   NTclustered gi|60698656|gb|AY915745.1| 6182 g1980 i0 96.875 3.40148698884758 96 3 36 0 1 96 372 467 Schistosoma japonicum SJCHGC09658 protein mRNA, partial cds blastn 915 161 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
16968981 16968981 PRJNA339266_S_NODE_5034_length_214_cov_2.723164_g5023_i0 PRJNA339266 5034 214 2.723164 5.82757096 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 350 5.97e-92   NTclustered gi|60698688|gb|AY915747.1| 6182 g5023 i0 96.244 2.3785046728972 213 8 99 0 2 214 315 103 Schistosoma japonicum SJCHGC09661 protein mRNA, partial cds blastn 509 350 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
23343308 23343308 PRJNA339266_S_NODE_11099_length_174_cov_62.810219_g11088_i0 PRJNA339266 11099 174 62.810219 109.28978106 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 294 2.1999999999999998e-75   NTclustered gi|56757963|gb|AY815390.1| 6182 g11088 i0 98.214 100.396551724138 168 3 98 0 1 168 2350 2517 Schistosoma japonicum SJCHGC01951 protein mRNA, complete cds blastn 17469 294 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;