RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA339266" and tax_phylum = "Cnidaria"

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tax_superkingdom 1

tax_phylum 1

  • Cnidaria · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA339266 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2345198 2345198 PRJNA339266_S_NODE_7982_length_190_cov_1.960784_g7971_i0 PRJNA339266 7982 190 1.960784 3.7254896 Metazoa 33208 Cnidaria other_Eukaryota 63.9 7.54e-6   NTclustered gi|2744778600|ref|XM_047274539.2| 6087 g7971 i0 95.122 10.0526315789474 41 1 21 1 115 154 1605 1645 PREDICTED: Hydra vulgaris amyloid-beta-like protein (LOC100201890), transcript variant X1, mRNA blastn 1910 63.9 1 Eukaryota Opisthokonta Metazoa Cnidaria Hydrozoa Anthoathecata Hydridae Hydra Hydra vulgaris
16968972 16968972 PRJNA339266_S_NODE_4574_length_219_cov_2.604396_g4563_i0 PRJNA339266 4574 219 2.604396 5.70362724 Pocillopora verrucosa 203993 Cnidaria other_Eukaryota 52.8 0.019   NTclustered gi|2751547462|ref|XM_066166458.1| 203993 g4563 i0 100 0.127853881278539 28 0 13 0 53 80 708 735 PREDICTED: Pocillopora verrucosa uncharacterized protein (LOC136280768), mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Scleractinia Pocilloporidae Pocillopora Pocillopora verrucosa
20792741 20792741 PRJNA339266_P_NODE_7177_length_163_cov_6.920635_g7147_i0 PRJNA339266 7177 163 6.920635 11.28063505 Anemonia sulcata 6108 Cnidaria other_Eukaryota 54.7 0.004   NTclustered gi|2917940759|emb|OZ237572.1| 6108 g7147 i0 100 0.177914110429448 29 0 18 0 135 163 10980753 10980725 Anemonia sulcata genome assembly, chromosome: 18 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Actiniaria Actiniidae Anemonia Anemonia sulcata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;