RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA335774" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA335774 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5493852 5493852 PRJNA335774_P_NODE_25485_length_309_cov_1.487288_g25333_i0 PRJNA335774 25485 309 1.487288 4.59571992 Treponema primitia 88058 Bacteria Bacteria 54.7 0.008   NTclustered gi|333738032|gb|CP001843.1| 545694 g25333 i0 100 0.184466019417476 29 0 9 0 116 144 3099569 3099597 Treponema primitia ZAS-2, complete genome blastn 57 54.7 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema primitia
15692945 15692945 PRJNA335774_P_NODE_23433_length_320_cov_1.627530_g23281_i0 PRJNA335774 23433 320 1.62753 5.208096 Borreliella burgdorferi 139 Bacteria Bacteria 54.7 0.008   NTclustered gi|226201945|gb|CP001557.1| 498738 g23281 i0 100 0.440625 29 0 9 0 208 236 28448 28420 Borrelia burgdorferi 29805 plasmid 29805_lp36, complete sequence blastn 141 54.7 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borreliella Borreliella burgdorferi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;