RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA335774" and tax_phylum = "Porifera"

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tax_superkingdom 1

tax_phylum 1

  • Porifera · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA335774 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22746600 22746600 PRJNA335774_P_NODE_42718_length_247_cov_0.885057_g42566_i0 PRJNA335774 42718 247 0.885057 2.18609079 Opisthokonta 33154 Porifera other_Eukaryota 148 2.77e-31   NTclustered gi|2732896645|ref|XM_065319679.1| 27933 g42566 i0 78.632 55.2712550607287 234 43 94 7 10 240 733 962 PREDICTED: Sycon ciliatum uncharacterized LOC135805613 (LOC135805613), mRNA blastn 13652 148 1 Eukaryota Opisthokonta Metazoa Porifera Calcarea Leucosolenida Sycettidae Sycon Sycon ciliatum
24616604 24616604 PRJNA335774_P_NODE_3340_length_725_cov_1.880368_g3202_i0 PRJNA335774 3340 725 1.880368 13.632668 Sycon ciliatum 27933 Porifera other_Eukaryota 342 3.8399999999999996e-89   NTclustered gi|2732909594|ref|XM_065321551.1| 27933 g3202 i0 81.106 10.6193103448276 434 77 60 5 12 444 490 919 PREDICTED: Sycon ciliatum uncharacterized LOC135808368 (LOC135808368), mRNA blastn 7699 342 1 Eukaryota Opisthokonta Metazoa Porifera Calcarea Leucosolenida Sycettidae Sycon Sycon ciliatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;