RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA335774" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA335774 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1069768 1069768 PRJNA335774_P_NODE_8641_length_489_cov_1.233173_g8489_i0 PRJNA335774 8641 489 1.233173 6.03021597 Babesia 5864 SAR_Eukaryotes SAR_Eukaryotes 58.4 0.001   NTclustered gi|1126394179|gb|M99575.2|BBOMER77K 5865 g8489 i0 89.13 4 46 5 9 0 163 208 1298 1343 Babesia bovis 85 kDa merozoite protein gene, complete cds blastn 1956 58.4 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia bovis
6768050 6768050 PRJNA335774_P_NODE_30466_length_285_cov_1.448113_g30314_i0 PRJNA335774 30466 285 1.448113 4.12712205 Eimeria acervulina 5801 SAR_Eukaryotes SAR_Eukaryotes 224 5.269999999999999e-54   NTclustered gi|42525238|gb|AY459430.1| 5801 g30314 i0 80.919 19.4561403508772 283 54 99 0 3 285 1396 1114 Eimeria acervulina isolate 12 heat shock protein 90 (Hsp90) gene, complete cds blastn 5545 224 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria acervulina
15693197 15693197 PRJNA335774_P_NODE_3453_length_716_cov_2.071540_g3314_i0 PRJNA335774 3453 716 2.07154 14.8322264 Plasmodium coatneyi 208452 SAR_Eukaryotes SAR_Eukaryotes 250 2.37e-61   NTclustered gi|1139862844|ref|XM_020059300.1| 208452 g3314 i0 75.775 61.7625698324022 516 114 71 10 138 647 586 76 Plasmodium coatneyi GTP-binding nuclear protein partial mRNA blastn 44222 250 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium coatneyi
15693471 15693471 PRJNA335774_P_NODE_48053_length_241_cov_0.916667_g47901_i0 PRJNA335774 48053 241 0.916667 2.20916747 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 60.2 1.3e-4   NTclustered gi|820693004|tpe|LN714485.1| 572307 g47901 i0 100 0.265560165975104 32 0 13 0 188 219 2580288 2580319 TPA_asm: Neospora caninum Liverpool, chromosome chrX, complete genome blastn 64 60.2 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum
18921049 18921049 PRJNA335774_P_NODE_22035_length_328_cov_2.760784_g21883_i0 PRJNA335774 22035 328 2.760784 9.05537152 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 87.9 8.46e-13   NTclustered gi|2794948076|ref|XR_010957801.1| 5871 g21883 i0 98 31.6859756097561 50 1 15 0 42 91 3406 3455 Babesia caballi 28S ribosomal RNA (BcabD6B2_91120), rRNA blastn 10393 87.9 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia caballi
23342874 23342874 PRJNA335774_P_NODE_9959_length_460_cov_1.149871_g9807_i0 PRJNA335774 9959 460 1.149871 5.2894066 Eimeria necatrix 51315 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.045   NTclustered gi|921126845|ref|XM_013582578.1| 51315 g9807 i0 100 0.0608695652173913 28 0 6 0 332 359 524 497 Eimeria necatrix hypothetical protein partial mRNA blastn 28 52.8 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria necatrix

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;