RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA335774" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 2 ✖

bioproject 1

  • PRJNA335774 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1665413 1665413 PRJNA335774_P_NODE_46122_length_243_cov_1.000000_g45970_i0 PRJNA335774 46122 243 1 2.43 Volvox carteri 3067 Plants Plants 58.4 4.71e-4   NTclustered gi|302851874|ref|XM_002957414.1| 3068 g45970 i0 97.143 0.374485596707819 35 0 14 1 18 51 7005 7039 Volvox carteri f. nagariensis uncharacterized protein (VOLCADRAFT_98515), partial mRNA blastn 91 58.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
4897613 4897613 PRJNA335774_P_NODE_7784_length_510_cov_0.853547_g7632_i0 PRJNA335774 7784 510 0.853547 4.3530897 root 1 Root_unresolved Root_unresolved 60.2 2.98e-4   NTclustered gi|2082268334|ref|XM_043071346.1| 3055 g7632 i0 97.222 6.3 36 0 7 1 464 499 233 267 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_16g678000v5), mRNA blastn 3213 60.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;