RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA335774" and tax_clade = "FCB group"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • FCB group · 4 ✖

bioproject 1

  • PRJNA335774 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5493860 5493860 PRJNA335774_P_NODE_25705_length_308_cov_1.195745_g25553_i0 PRJNA335774 25705 308 1.195745 3.6828946 Solitalea lacus 2911172 Bacteria Bacteria 54.7 0.008   NTclustered gi|2189814522|gb|CP091740.1| 2911172 g25553 i0 100 0.0941558441558442 29 0 9 0 183 211 346604 346576 Solitalea lacus strain S2-8 chromosome blastn 29 54.7 1 Bacteria FCB group Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Solitalea Solitalea lacus
6768257 6768257 PRJNA335774_P_NODE_39226_length_251_cov_0.865169_g39074_i0 PRJNA335774 39226 251 0.865169 2.17157419 Cloacibacterium normanense 237258 Bacteria Bacteria 409 1.17e-109   NTclustered gi|1527207946|gb|CP034157.1| 237258 g39074 i0 96.016 3.9800796812749 251 10 100 0 1 251 2067022 2066772 Cloacibacterium normanense strain NRS-1 chromosome, complete genome blastn 999 409 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Cloacibacterium Cloacibacterium normanense
10594249 10594249 PRJNA335774_P_NODE_35869_length_263_cov_1.010526_g35717_i0 PRJNA335774 35869 263 1.010526 2.65768338 Chryseobacterium endophyticum 1854762 Bacteria Bacteria 464 2.5999999999999993e-126   NTclustered gi|2731632474|gb|CP154834.1| 1854762 g35717 i0 98.485 365.304182509506 264 2 100 2 1 263 102649 102911 Chryseobacterium endophyticum strain OsEnb-ALM-A6 chromosome, complete genome blastn 96075 464 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium endophyticum
13144154 13144154 PRJNA335774_P_NODE_39371_length_251_cov_0.865169_g39219_i0 PRJNA335774 39371 251 0.865169 2.17157419 Maribacter halichondriae 2980554 Bacteria Bacteria 52.8 0.023   NTclustered gi|2430016930|gb|CP107030.2| 2980554 g39219 i0 100 0.111553784860558 28 0 11 0 221 248 3898419 3898392 Maribacter halichondriae strain Hal144 chromosome, complete genome blastn 28 52.8 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Maribacter Maribacter halichondriae

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;