RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA335774" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 2 ✖

bioproject 1

  • PRJNA335774 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6767970 6767970 PRJNA335774_P_NODE_27446_length_299_cov_1.353982_g27294_i0 PRJNA335774 27446 299 1.353982 4.04840618 Seculamonas ecuadoriensis 221724 Root_unresolved Root_unresolved 281 3.26e-71   NTclustered gi|2443276569|gb|OP760369.1| 221724 g27294 i0 83.838 84.1404682274247 297 46 99 2 1 296 710 1005 Seculamonas ecuadoriensis V-type proton ATPase subunit B mRNA, complete cds blastn 25158 281 1 Eukaryota Discoba       Jakobida   Seculamonas Seculamonas ecuadoriensis
18241602 18241602 PRJNA335774_P_NODE_12215_length_421_cov_2.310345_g12063_i0 PRJNA335774 12215 421 2.310345 9.72655245 Leishmania sp. Namibia 2802991 Euglenozoa other_Eukaryota 250 1.34e-61   NTclustered gi|2794984235|ref|XM_067854863.1| 2802991 g12063 i0 79.666 12.0641330166271 359 63 84 7 35 388 38 391 Leishmania sp. Namibia uncharacterized protein (JIQ42_06774), partial mRNA blastn 5079 250 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania sp. Namibia

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;