RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA330616" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA330616 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
389647 389647 PRJNA330616_P_NODE_19041_length_193_cov_1.416667_g18632_i0 PRJNA330616 19041 193 1.416667 2.73416731 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 340 3.17e-89   NTclustered gi|68479954|gb|DQ076149.1| 6182 g18632 i0 98.446 1 193 3 100 0 1 193 199 391 Schistosoma japonicum clone 1XA1 unknown mRNA blastn 193 340 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
6767512 6767512 PRJNA330616_P_NODE_8226_length_289_cov_2.300000_g7817_i0 PRJNA330616 8226 289 2.3 6.647 Bresslauilla relicta 1311963 Platyhelminthes Platyhelminthes 86.1 2.64e-12   NTclustered gi|588313927|gb|KC869885.1| 1311963 g7817 i0 81.081 0.581314878892734 111 17 38 2 113 223 1712 1606 Bresslauilla relicta 28S ribosomal RNA genes, partial sequence blastn 168 86.1 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Rhabdocoela Graffillidae Bresslauilla Bresslauilla relicta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;