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contig_metadata

18 rows where analysis = "blastn", bioproject = "PRJNA330616" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 18 ✖

tax_clade 1

bioproject 1

  • PRJNA330616 · 18 ✖

analysis 1

  • blastn · 18 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2940433 2940433 PRJNA330616_P_NODE_29443_length_163_cov_3.570175_g29034_i0 PRJNA330616 29443 163 3.570175 5.81938525 Phytophthora capsici 4784 SAR_Eukaryotes SAR_Eukaryotes 110 7.95e-20   NTclustered gi|189084924|gb|BT032455.1| 4784 g29034 i0 81.119 1.58895705521472 143 21 86 4 2 141 155 294 Phytophthora capsici clone CBOU133-E02 mRNA sequence blastn 259 110 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici
4217099 4217099 PRJNA330616_P_NODE_32984_length_154_cov_2.914286_g32575_i0 PRJNA330616 32984 154 2.914286 4.48800044 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 187 3.319999999999999e-43   NTclustered gi|813199067|ref|XR_001099866.1| 695850 g32575 i0 90.345 35.1948051948052 145 10 93 4 1 143 1523 1665 Saprolegnia parasitica CBS 223.65 28S ribosomal RNA rRNA blastn 5420 187 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
5493068 5493068 PRJNA330616_P_NODE_13265_length_228_cov_1.139665_g12856_i0 PRJNA330616 13265 228 1.139665 2.5984362 Achlya hypogyna 1202772 SAR_Eukaryotes SAR_Eukaryotes 359 1.07e-94   NTclustered gi|542687346|ref|NC_022178.1| 1202772 g12856 i0 95.175 106.842105263158 228 9 99 2 3 228 8728 8501 Achlya hypogyna mitochondrion, complete genome blastn 24360 359 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya hypogyna
5493084 5493084 PRJNA330616_P_NODE_14545_length_218_cov_3.011834_g14136_i0 PRJNA330616 14545 218 3.011834 6.56579812 Aphanomyces sp. 1982524 SAR_Eukaryotes SAR_Eukaryotes 399 5.969999999999999e-107   NTclustered gi|1578815424|gb|MK546601.1| 1982524 g14136 i0 100 99.1192660550459 216 0 99 0 1 216 356 571 Aphanomyces sp. voucher CCIBt4545 large subunit ribosomal RNA gene, partial sequence blastn 21608 399 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces sp.
5493359 5493359 PRJNA330616_P_NODE_3145_length_491_cov_2.382353_g2740_i0 PRJNA330616 3145 491 2.382353 11.69735323 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 281 5.61e-71   NTclustered gi|698807229|ref|XM_009838342.1| 112090 g2740 i0 80.533 68.8859470468432 375 65 75 4 118 485 441 68 Aphanomyces astaci polyubiquitin mRNA blastn 33823 281 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
6767469 6767469 PRJNA330616_P_NODE_4826_length_385_cov_6.383929_g4417_i0 PRJNA330616 4826 385 6.383929 24.57812665 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 512 1.4000000000000001e-140   NTclustered gi|325195057|emb|FR825852.1| 890382 g4417 i0 91.689 87.6441558441558 373 25 96 5 16 384 108 478 Albugo laibachii Nc14, genomic contig CONTIG_2891_NC14_v4_540_391 blastn 33743 512 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
6767478 6767478 PRJNA330616_P_NODE_5506_length_358_cov_1.776699_g5097_i0 PRJNA330616 5506 358 1.776699 6.36058242 Phytophthora cactorum 29920 SAR_Eukaryotes SAR_Eukaryotes 187 8.909999999999998e-43   NTclustered gi|1490229970|gb|MH094138.1| 29920 g5097 i0 90.714 39.7905027932961 140 13 39 0 13 152 536 675 Phytophthora cactorum isolate KRJ1 ATP synthase protein 9 (atp9) gene, partial cds; NADH dehydrogenase subunit 9 (nad9) gene, complete cds; and apocytochrome b (cob) gene, partial cds; mitochondrial blastn 14245 187 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cactorum
11868217 11868217 PRJNA330616_P_NODE_16630_length_205_cov_2.410256_g16221_i0 PRJNA330616 16630 205 2.410256 4.9410248 Aphanomyces sinensis 1125843 SAR_Eukaryotes SAR_Eukaryotes 363 7.279999999999998e-96   NTclustered gi|378925979|gb|JQ070142.1| 1125843 g16221 i0 98.537 100 205 3 100 0 1 205 75 279 Aphanomyces sinensis strain ATCC MYA-4825 28S ribosomal RNA gene, complete sequence blastn 20500 363 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces sinensis
12547877 12547877 PRJNA330616_P_NODE_22470_length_178_cov_1.581395_g22061_i0 PRJNA330616 22470 178 1.581395 2.8148831 Aphanomyces 100860 SAR_Eukaryotes SAR_Eukaryotes 318 1.34e-82   NTclustered gi|698793877|ref|XR_717099.1| 112090 g22061 i0 98.876 99.8314606741573 178 2 100 0 1 178 701 878 Aphanomyces astaci 18S ribosomal RNA rRNA blastn 17770 318 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
13822910 13822910 PRJNA330616_P_NODE_5491_length_358_cov_3.799353_g5082_i0 PRJNA330616 5491 358 3.799353 13.60168374 Aphanomyces 100860 SAR_Eukaryotes SAR_Eukaryotes 662 0   NTclustered gi|166048041|emb|CU364162.1| 100861 g5082 i0 100 98.6787709497207 358 0 100 0 1 358 540 183 Aphanomyces euteiches cDNA blastn 35327 662 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
18241175 18241175 PRJNA330616_P_NODE_13655_length_225_cov_1.159091_g13246_i0 PRJNA330616 13655 225 1.159091 2.60795475 Achlya bisexualis 4766 SAR_Eukaryotes SAR_Eukaryotes 250 6.6099999999999996e-62   NTclustered gi|2289|emb|X59936.1| 4766 g13246 i0 86.667 95.4844444444444 225 30 100 0 1 225 233 9 A.bisexualis gene for actin blastn 21484 250 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya bisexualis
18241254 18241254 PRJNA330616_P_NODE_18775_length_194_cov_1.758621_g18366_i0 PRJNA330616 18775 194 1.758621 3.41172474 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 291 3.2599999999999993e-74   NTclustered gi|1111669769|ref|NC_032052.1| 157072 g18366 i0 93.782 105.5 193 12 99 0 1 193 2860 2668 Aphanomyces invadans isolate NJM9701 mitochondrion, complete genome blastn 20467 291 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
18241445 18241445 PRJNA330616_P_NODE_33035_length_153_cov_3.144231_g32626_i0 PRJNA330616 33035 153 3.144231 4.81067343 Plasmopara halstedii 4781 SAR_Eukaryotes SAR_Eukaryotes 84.2 4.44e-12   NTclustered gi|1378160993|ref|XM_024729844.1| 4781 g32626 i0 87.671 2.05228758169935 73 7 47 2 38 109 398 469 Plasmopara halstedii 40s ribosomal protein s6 (PHALS_14102), partial mRNA blastn 314 84.2 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara halstedii
18241472 18241472 PRJNA330616_P_NODE_5195_length_370_cov_2.208723_g4786_i0 PRJNA330616 5195 370 2.208723 8.1722751 Achlya klebsiana 4767 SAR_Eukaryotes SAR_Eukaryotes 366 1.1099999999999999e-96   NTclustered gi|166303|gb|J05116.1|ACKCAL 4767 g4786 i0 88.487 80.8459459459459 304 33 82 2 68 370 945 643 A.klebsiana calmodulin gene, complete cds blastn 29913 366 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya klebsiana
19515599 19515599 PRJNA330616_P_NODE_25956_length_167_cov_0.864407_g25547_i0 PRJNA330616 25956 167 0.864407 1.44355969 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 259 7.69e-65   NTclustered gi|673038275|ref|XM_008874877.1| 157072 g25547 i0 94.611 62.6586826347305 167 9 100 0 1 167 225 59 Aphanomyces invadans 60S ribosomal protein L27a mRNA blastn 10464 259 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
22066277 22066277 PRJNA330616_P_NODE_3778_length_442_cov_1.526718_g3371_i0 PRJNA330616 3778 442 1.526718 6.74809356 Paralagenidium karlingii 1440115 SAR_Eukaryotes SAR_Eukaryotes 141 8.87e-29   NTclustered gi|2554484921|ref|NC_080886.1| 1440115 g3371 i0 90.09 25.2149321266968 111 8 25 3 256 365 41764 41656 Paralagenidium karlingii isolate 19-09020 mitochondrion, complete genome blastn 11145 141 1 Eukaryota Sar   Oomycota Peronosporomycetes     Paralagenidium Paralagenidium karlingii
23341595 23341595 PRJNA330616_P_NODE_22819_length_177_cov_1.234375_g22410_i0 PRJNA330616 22819 177 1.234375 2.18484375 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 307 2.89e-79   NTclustered gi|698793876|ref|XR_717098.1| 112090 g22410 i0 97.778 95.6101694915254 180 1 100 2 1 177 1619 1798 Aphanomyces astaci 28S ribosomal RNA rRNA blastn 16923 307 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
24616009 24616009 PRJNA330616_P_NODE_6880_length_318_cov_2.323420_g6471_i0 PRJNA330616 6880 318 2.32342 7.3884756 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 183 1.01e-41   NTclustered gi|673019759|ref|XM_008865619.1| 157072 g6471 i0 80.672 13.2358490566038 238 44 75 2 1 237 363 127 Aphanomyces invadans 40S ribosomal protein S23 mRNA blastn 4209 183 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;