RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA330616" and tax_phylum = "Myxococcota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA330616 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6767088 6767088 PRJNA330616_P_NODE_10386_length_256_cov_2.463768_g9977_i0 PRJNA330616 10386 256 2.463768 6.30724608 Pendulispora rubella 2741070 Bacteria Bacteria 291 4.529999999999999e-74   NTclustered gi|2698045512|gb|CP089929.1| 2741070 g9977 i0 87.209 430.38671875 258 30 100 3 1 256 7289744 7290000 Pendulispora rubella strain MSr11368 chromosome, complete genome blastn 110179 291 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora rubella
18241391 18241391 PRJNA330616_P_NODE_29235_length_164_cov_0.886957_g28826_i0 PRJNA330616 29235 164 0.886957 1.45460948 Corallococcus coralloides 184914 Bacteria Bacteria 73.1 1.05e-8   NTclustered gi|1561763003|gb|CP034669.1| 184914 g28826 i0 90.909 18.5670731707317 55 3 33 2 111 164 3931329 3931276 Corallococcus coralloides strain B035 chromosome, complete genome blastn 3045 73.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus coralloides
18920873 18920873 PRJNA330616_P_NODE_295_length_1713_cov_7.757212_g182_i0 PRJNA330616 295 1713 7.757212 132.88104156 Pendulispora 3375062 Bacteria Bacteria 1925 0   NTclustered gi|2698045512|gb|CP089929.1| 2741070 g182 i0 87.024 173.670169293637 1734 191 100 29 1 1713 9852416 9854136 Pendulispora rubella strain MSr11368 chromosome, complete genome blastn 297497 1925 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora rubella
18920987 18920987 PRJNA330616_P_NODE_9395_length_271_cov_1.490991_g8986_i0 PRJNA330616 9395 271 1.490991 4.04058561 Polyangiaceae 49 Bacteria Bacteria 202 2.329999999999999e-47   NTclustered gi|169977285|emb|AM946600.1| 52 g8986 i0 80.812 79.5166051660517 271 40 97 9 1 264 1421 1686 Chondromyces crocatus ajudazol biosynthesis gene cluster, strain Cmc5 blastn 21549 202 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Chondromyces Chondromyces crocatus
19515663 19515663 PRJNA330616_P_NODE_30556_length_162_cov_2.681416_g30147_i0 PRJNA330616 30556 162 2.681416 4.34389392 Myxococcales bacterium 2026763 Bacteria Bacteria 230 5.799999999999999e-56   NTclustered gi|1958041644|gb|CP064980.1| 2026763 g30147 i0 92.5 217.277777777778 160 12 99 0 1 160 1308218 1308377 Myxococcales bacterium isolate Fred_18-Q3-R57-64_BAT3C.417 chromosome blastn 35199 230 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
20195534 20195534 PRJNA330616_P_NODE_536_length_1339_cov_6.813178_g182_i1 PRJNA330616 536 1339 6.813178 91.22845342 Myxococcia 32015 Bacteria Bacteria 1408 0   NTclustered gi|913610804|gb|CP012333.1| 1391654 g182 i1 88.017 191.644510828977 1210 120 89 20 143 1338 3942967 3941769 Labilithrix luteola strain DSM 27648, complete genome blastn 256612 1408 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;