RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA330616" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA330616 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
389519 389519 PRJNA330616_P_NODE_11281_length_246_cov_1.553299_g10872_i0 PRJNA330616 11281 246 1.553299 3.82111554 Bradybaena similaris 145626 Mollusca Mollusca 174 4.55e-39   NTclustered gi|2913002568|dbj|AP039611.1| 145626 g10872 i0 84.066 1.47560975609756 182 27 74 2 56 236 2367324 2367504 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, sequence_id: unanchored2, sequence blastn 363 174 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
6767127 6767127 PRJNA330616_P_NODE_12706_length_232_cov_1.672131_g12297_i0 PRJNA330616 12706 232 1.672131 3.87934392 Bradybaena similaris 145626 Mollusca Mollusca 390 3.87e-104   NTclustered gi|2913001816|dbj|AP039609.1| 145626 g12297 i0 96.983 157.021551724138 232 7 100 0 1 232 1219 1450 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 28, sequence blastn 36429 390 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
22065972 22065972 PRJNA330616_P_NODE_12638_length_233_cov_1.092391_g12229_i0 PRJNA330616 12638 233 1.092391 2.54527103 Ostrea edulis 37623 Mollusca Mollusca 219 1.94e-52   NTclustered gi|2507395507|ref|XM_048877989.2| 37623 g12229 i0 83.621 170.44635193133 232 38 100 0 2 233 1115 1346 PREDICTED: Ostrea edulis polyubiquitin-C (LOC125650051), mRNA blastn 39714 219 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Ostreida Ostreidae Ostrea Ostrea edulis
22746131 22746131 PRJNA330616_P_NODE_12738_length_232_cov_1.327869_g12329_i0 PRJNA330616 12738 232 1.327869 3.08065608 Opisthokonta 33154 Mollusca Mollusca 250 6.85e-62   NTclustered gi|2751288624|ref|XM_011438080.4| 29159 g12329 i0 86.147 197.155172413793 231 32 99 0 2 232 542 772 PREDICTED: Magallana gigas polyubiquitin-C (LOC105334565), mRNA blastn 45740 250 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Ostreida Ostreidae Magallana Magallana gigas

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;