RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA330616" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA330616 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1069302 1069302 PRJNA330616_P_NODE_17761_length_199_cov_1.640000_g17352_i0 PRJNA330616 17761 199 1.64 3.2636 Gemmatimonas 173479 Bacteria Bacteria 279 7.280000000000001e-71   NTclustered gi|470475286|ref|NR_076270.1| 173480 g17352 i0 92.347 9.85929648241206 196 15 98 0 4 199 1434 1239 Gemmatimonas aurantiaca strain T-27 23S ribosomal RNA gene, complete sequence blastn 1962 279 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca
6172132 6172132 PRJNA330616_P_NODE_11685_length_242_cov_1.321244_g11276_i0 PRJNA330616 11685 242 1.321244 3.19741048 Gemmatimonadaceae 219687 Bacteria Bacteria 255 1.55e-63   NTclustered gi|575456455|gb|CP007128.1| 861299 g11276 i0 85.887 78.9297520661157 248 26 100 9 1 242 3042359 3042603 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 19101 255 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
8042812 8042812 PRJNA330616_P_NODE_13027_length_230_cov_0.812155_g12618_i0 PRJNA330616 13027 230 0.812155 1.8679565 Pseudogemmatithrix spongiicola 3062599 Bacteria Bacteria 309 1.1e-79   NTclustered gi|2557479348|gb|CP130613.1| 3062599 g12618 i0 95.812 11.8565217391304 191 8 83 0 1 191 1553398 1553588 Pseudogemmatithrix spongiicola strain 318 chromosome, complete genome blastn 2727 309 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Pseudogemmatithrix Pseudogemmatithrix spongiicola
10593588 10593588 PRJNA330616_P_NODE_7649_length_301_cov_1.646825_g7240_i0 PRJNA330616 7649 301 1.646825 4.95694325 Gemmatimonas groenlandica 2732249 Bacteria Bacteria 287 7.050000000000001e-73   NTclustered gi|1839994010|gb|CP053085.1| 2732249 g7240 i0 84.262 72.9734219269103 305 36 99 11 4 301 1102985 1103284 Gemmatimonas groenlandica strain TET16 chromosome, complete genome blastn 21965 287 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas groenlandica
23341625 23341625 PRJNA330616_P_NODE_25179_length_168_cov_1.285714_g24770_i0 PRJNA330616 25179 168 1.285714 2.15999952 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 220 3.66e-53   NTclustered gi|2874253978|emb|OY970303.1| 412054 g24770 i0 93.878 268.452380952381 147 8 89 1 20 165 1903853 1903999 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 45100 220 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;