RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA330616" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 8 ✖

tax_clade 1

bioproject 1

  • PRJNA330616 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1664435 1664435 PRJNA330616_P_NODE_27702_length_165_cov_0.879310_g27293_i0 PRJNA330616 27702 165 0.87931 1.4508615 Acytostelium subglobosum 361139 Evosea other_Eukaryota 87.9 3.78e-13   NTclustered gi|831790587|ref|XM_012903983.1| 1410327 g27293 i0 80 0.787878787878788 130 16 76 7 41 165 1139 1015 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 130 87.9 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
5493253 5493253 PRJNA330616_P_NODE_24285_length_171_cov_2.000000_g23876_i0 PRJNA330616 24285 171 2 3.42 Stemonitopsis subcaespitosa 1048528 Evosea other_Eukaryota 235 1.3199999999999998e-57   NTclustered gi|426281760|gb|JX681133.1| 1048528 g23876 i0 91.716 98.9239766081871 169 14 99 0 3 171 800 632 Stemonitopsis subcaespitosa actin gene, partial cds blastn 16916 235 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Stemonitida Stemonitidae Stemonitopsis Stemonitopsis subcaespitosa
11868233 11868233 PRJNA330616_P_NODE_17270_length_202_cov_1.228758_g16861_i0 PRJNA330616 17270 202 1.228758 2.48209116 Dictyostelium purpureum 5786 Evosea other_Eukaryota 97.1 8.01e-16   NTclustered gi|330822615|ref|XM_003291697.1| 5786 g16861 i0 83.019 0.787128712871287 106 18 52 0 33 138 771 876 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_39483), partial mRNA blastn 159 97.1 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
11868327 11868327 PRJNA330616_P_NODE_24330_length_171_cov_1.672131_g23921_i0 PRJNA330616 24330 171 1.672131 2.85934401 Acytostelium subglobosum 361139 Evosea other_Eukaryota 132 1.79e-26   NTclustered gi|831767714|ref|XM_012896732.1| 1410327 g23921 i0 82.877 6.63157894736842 146 25 85 0 26 171 822 677 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 1134 132 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
16967162 16967162 PRJNA330616_P_NODE_31594_length_161_cov_28.339286_g31185_i0 PRJNA330616 31594 161 28.339286 45.62625046 Dictyostelium discoideum 44689 Evosea other_Eukaryota 278 2.03e-70   NTclustered gi|1040460865|dbj|LC159244.1| 44689 g31185 i0 100 65.4347826086957 150 0 93 0 12 161 354 205 Dictyostelium discoideum genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 26S rRNA, partial and complete sequence, strain: WS-18 blastn 10535 278 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
19515669 19515669 PRJNA330616_P_NODE_31316_length_162_cov_0.902655_g30907_i0 PRJNA330616 31316 162 0.902655 1.4623011 Dictyostelium purpureum 5786 Evosea other_Eukaryota 137 3.6199999999999997e-28   NTclustered gi|330795499|ref|XM_003285763.1| 5786 g30907 i0 85.496 2.2716049382716 131 19 81 0 30 160 1918 2048 Dictyostelium purpureum P-type ATPase (DICPUDRAFT_149704), partial mRNA blastn 368 137 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
19515674 19515674 PRJNA330616_P_NODE_31536_length_162_cov_0.902655_g31127_i0 PRJNA330616 31536 162 0.902655 1.4623011 Cavenderia fasciculata 261658 Evosea other_Eukaryota 130 6.05e-26   NTclustered gi|470239817|ref|XM_004351826.1| 261658 g31127 i0 86.441 74.0617283950617 118 16 73 0 16 133 554 437 Cavenderia fasciculata glyceraldehyde-3-phosphate dehydrogenase (gpdA), partial mRNA blastn 11998 130 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
20791203 20791203 PRJNA330616_P_NODE_26477_length_166_cov_1.307692_g26068_i0 PRJNA330616 26477 166 1.307692 2.17076872 Heterostelium album 2086695 Evosea other_Eukaryota 154 3.699999999999999e-33   NTclustered gi|1160573212|ref|XM_020576784.1| 670386 g26068 i0 87.879 19.2168674698795 132 14 79 2 2 132 131 1 Polysphondylium pallidum PN500 calmodulin (calA), partial mRNA blastn 3190 154 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;