RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

15 rows where analysis = "blastn", bioproject = "PRJNA330616" and tax_phylum = "Chytridiomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 15 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA330616 · 15 ✖

analysis 1

  • blastn · 15 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
389544 389544 PRJNA330616_P_NODE_12561_length_233_cov_2.086957_g12152_i0 PRJNA330616 12561 233 2.086957 4.86260981 Spizellomyces punctatus 109760 Fungi Fungi 141 4.33e-29   NTclustered gi|1026989847|ref|XM_016753271.1| 645134 g12152 i0 84.507 5.00429184549356 142 22 61 0 82 223 235 94 Spizellomyces punctatus DAOM BR117 60S ribosomal protein L37a (SPPG_05030), mRNA blastn 1166 141 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus
1664292 1664292 PRJNA330616_P_NODE_16462_length_206_cov_1.949045_g16053_i0 PRJNA330616 16462 206 1.949045 4.0150327 Synchytrium microbalum 1806994 Fungi Fungi 128 2.91e-25   NTclustered gi|1759152372|ref|XM_031169414.1| 1806994 g16053 i0 88.571 0.509708737864078 105 12 51 0 102 206 647 543 Synchytrium microbalum uncharacterized protein (SmJEL517_g03486), partial mRNA blastn 105 128 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Synchytriales Synchytriaceae Synchytrium Synchytrium microbalum
2940166 2940166 PRJNA330616_P_NODE_12803_length_231_cov_2.736264_g12394_i0 PRJNA330616 12803 231 2.736264 6.32076984 Spizellomyces punctatus 109760 Fungi Fungi 122 1.55e-23   NTclustered gi|1027027577|ref|XM_016756738.1| 645134 g12394 i0 79.444 46.9134199134199 180 31 77 6 37 213 298 122 Spizellomyces punctatus DAOM BR117 uncharacterized protein (SPPG_08592), mRNA blastn 10837 122 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus
5493151 5493151 PRJNA330616_P_NODE_17845_length_199_cov_1.320000_g17436_i0 PRJNA330616 17845 199 1.32 2.6268 Spizellomyces punctatus 109760 Fungi Fungi 135 1.67e-27   NTclustered gi|1027028346|ref|XM_016756817.1| 645134 g17436 i0 81.988 4.7286432160804 161 27 80 2 40 199 1733 1574 Spizellomyces punctatus DAOM BR117 ADP,ATP carrier protein 1, mitochondrial, variant (SPPG_08669), partial mRNA blastn 941 135 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus
5493298 5493298 PRJNA330616_P_NODE_27305_length_165_cov_8.413793_g26896_i0 PRJNA330616 27305 165 8.413793 13.88275845 Lobulomycetales sp. 2058121 Fungi Fungi 106 1.04e-18   NTclustered gi|2468791005|gb|OQ702918.1| 2058121 g26896 i0 95.455 38.2424242424242 66 3 40 0 99 164 3925 3990 Lobulomycetales sp. isolate PSC233 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 6310 106 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Lobulomycetales     Lobulomycetales sp.
6172313 6172313 PRJNA330616_P_NODE_29425_length_163_cov_8.570175_g29016_i0 PRJNA330616 29425 163 8.570175 13.96938525 Fimicolochytrium 1396492 Fungi Fungi 283 4.43e-72   NTclustered gi|386165070|gb|HQ901690.1| 1396494 g29016 i0 98.75 98.3251533742331 160 1 98 1 4 163 810 652 Fimicolochytrium alabamae voucher MP01 28S large subunit ribosomal RNA gene, partial sequence blastn 16027 283 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium alabamae
11868261 11868261 PRJNA330616_P_NODE_19070_length_193_cov_1.250000_g18661_i0 PRJNA330616 19070 193 1.25 2.4125 Piromyces sp. E2 73868 Fungi Fungi 200 5.62e-47   NTclustered gi|7838274|emb|AJ238886.1| 73868 g18661 i0 86.022 85 186 26 96 0 6 191 476 661 Piromyces sp. E2 hsp70.1 gene for putative heat shock protein 70, partial blastn 16405 200 1 Eukaryota Opisthokonta Fungi Chytridiomycota Neocallimastigomycetes Neocallimastigales Neocallimastigaceae Piromyces Piromyces sp. E2
14418398 14418398 PRJNA330616_P_NODE_1592_length_727_cov_179.800885_g1231_i0 PRJNA330616 1592 727 179.800885 1307.15243395 Geranomyces variabilis 109894 Fungi Fungi 257 1.44e-63   NTclustered gi|1866582431|gb|MT730606.1| 109894 g1231 i0 95.625 28.5887207702889 160 7 29 0 372 531 4464 4623 Geranomyces variabilis isolate AF30 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 20784 257 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Geranomyces Geranomyces variabilis
16372080 16372080 PRJNA330616_P_NODE_8093_length_291_cov_5.483471_g7684_i0 PRJNA330616 8093 291 5.483471 15.95690061 Powellomycetaceae 1134080 Fungi Fungi 416 8.3e-112   NTclustered gi|1866582454|gb|MT730629.1| 109894 g7684 i0 92.256 101.694158075601 297 17 100 6 1 291 373 77 Geranomyces variabilis isolate Barr350 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 29593 420 0.990476190476191 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Geranomyces Geranomyces variabilis
16967028 16967028 PRJNA330616_P_NODE_21934_length_180_cov_3.893130_g21525_i0 PRJNA330616 21934 180 3.89313 7.007634 Rhizophydiales sp. 2011922 Fungi Fungi 58.4 3.28e-4   NTclustered gi|2468790812|gb|OQ702855.1| 2011922 g21525 i0 94.737 17.5666666666667 38 1 21 1 144 180 4734 4771 Rhizophydiales sp. isolate PSC037 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 3162 58.4 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales     Rhizophydiales sp.
20790983 20790983 PRJNA330616_P_NODE_10097_length_261_cov_1.259434_g9688_i0 PRJNA330616 10097 261 1.259434 3.28712274 Polychytrium aggregatum 110093 Fungi Fungi 219 2.22e-52   NTclustered gi|2432150000|ref|XM_053114178.1| 110093 g9688 i0 83.843 6.04597701149425 229 37 88 0 21 249 507 279 Polychytrium aggregatum ribosomal protein S2, flavodoxin-like domain-containing protein (BJ171DRAFT_582387), partial mRNA blastn 1578 219 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
21470975 21470975 PRJNA330616_P_NODE_1457_length_767_cov_24.855153_g1106_i0 PRJNA330616 1457 767 24.855153 190.63902351 Fimicolochytrium 1396492 Fungi Fungi 505 4.92e-138   NTclustered gi|1866582580|gb|MT730755.1| 1396494 g1106 i0 96.405 64.7040417209909 306 11 65 0 462 767 4393 4698 Fimicolochytrium alabamae isolate JEL0588 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 49628 505 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium alabamae
22066313 22066313 PRJNA330616_P_NODE_6718_length_322_cov_4.813187_g6309_i0 PRJNA330616 6718 322 4.813187 15.498462140000001 Spizellomyces punctatus 109760 Fungi Fungi 318 2.7e-82   NTclustered gi|1027029543|ref|XR_001677161.1| 645134 g6309 i0 95.074 47.9347826086956 203 8 62 2 1 201 3883 4085 Spizellomyces punctatus DAOM BR117 28S ribosomal RNA (SPPG_11002), rRNA blastn 15435 318 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus
25295461 25295461 PRJNA330616_P_NODE_12120_length_237_cov_1.898936_g11711_i0 PRJNA330616 12120 237 1.898936 4.50047832 Powellomycetaceae 1134080 Fungi Fungi 422 1.41e-113   NTclustered gi|38260238|gb|AY349076.1| 252690 g11711 i0 98.734 101.080168776371 237 3 100 0 1 237 646 410 Powellomyces sp. EA 28S large subunit ribosomal RNA gene, partial sequence blastn 23956 422 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Powellomyces Powellomyces sp. EA
25295661 25295661 PRJNA330616_P_NODE_4540_length_398_cov_11.126074_g4131_i0 PRJNA330616 4540 398 11.126074 44.28177452 Powellomycetaceae 1134080 Fungi Fungi 730 0   NTclustered gi|38260204|gb|AY349042.1| 252690 g4131 i0 99.749 99.9321608040201 398 1 100 0 1 398 902 505 Powellomyces sp. EA 18S small subunit ribosomal RNA gene, partial sequence blastn 39773 730 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Powellomyces Powellomyces sp. EA

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;