RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA330616" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA330616 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5493159 5493159 PRJNA330616_P_NODE_18145_length_197_cov_1.851351_g17736_i0 PRJNA330616 18145 197 1.851351 3.64716147 Anaerolineales bacterium 2073117 Bacteria Bacteria 340 3.2499999999999995e-89   NTclustered gi|2556895010|gb|CP129480.1| 2073117 g17736 i0 97.959 37.7868020304569 196 4 99 0 2 197 1576437 1576242 MAG: Anaerolineales bacterium isolate cMAG.16 chromosome, complete genome blastn 7444 340 1 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales     Anaerolineales bacterium
16966978 16966978 PRJNA330616_P_NODE_18354_length_196_cov_2.000000_g17945_i0 PRJNA330616 18354 196 2 3.92 Anaerolineales bacterium 2073117 Bacteria Bacteria 158 3.49e-34   NTclustered gi|2556895010|gb|CP129480.1| 2073117 g17945 i0 91.964 95.7295918367347 112 9 57 0 62 173 1576656 1576545 MAG: Anaerolineales bacterium isolate cMAG.16 chromosome, complete genome blastn 18763 158 1 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales     Anaerolineales bacterium
16967220 16967220 PRJNA330616_P_NODE_6534_length_327_cov_1.435252_g6125_i0 PRJNA330616 6534 327 1.435252 4.69327404 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 307 5.94e-79   NTclustered gi|2874253788|emb|OY969772.1| 1672391 g6125 i0 84.52 91.9847094801223 323 37 98 8 8 327 671121 671433 MAG: uncultured Chloroflexia bacterium isolate MFD02416.bin.2.42 genome assembly, chromosome: 1 blastn 30079 307 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;