RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA330616" and tax_phylum = "Bacillariophyta"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA330616 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7447252 7447252 PRJNA330616_P_NODE_25526_length_167_cov_1.000000_g25117_i0 PRJNA330616 25526 167 1 1.67 Bacillariales 33851 SAR_Eukaryotes SAR_Eukaryotes 303 3.5e-78   NTclustered gi|2127877266|ref|NC_058784.1| 183589 g25117 i0 99.401 194.97005988024 167 1 100 0 1 167 46908 47074 Pseudo-nitzschia multistriata isolate CNS00142 chloroplast, complete genome blastn 32560 303 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Pseudo-nitzschia Pseudo-nitzschia multistriata
23341759 23341759 PRJNA330616_P_NODE_4759_length_389_cov_1.200000_g4350_i0 PRJNA330616 4759 389 1.2 4.668 Lithodesmioides sp. mgcode 4 2914905 SAR_Eukaryotes SAR_Eukaryotes 252 3.4099999999999998e-62   NTclustered gi|2073953334|gb|MW849271.1| 2914905 g4350 i0 78.571 60.681233933162 392 76 99 8 2 389 21370 21757 Lithodesmioides sp. mgcode 4 isolate Qingdao in China mitochondrion, complete genome blastn 23605 252 1 Eukaryota Sar   Bacillariophyta Mediophyceae Lithodesmiales Lithodesmiaceae Lithodesmioides Lithodesmioides sp. mgcode 4

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;