RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA330616" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA330616 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5493399 5493399 PRJNA330616_P_NODE_4485_length_401_cov_3.366477_g4076_i0 PRJNA330616 4485 401 3.366477 13.49957277 uncultured Eimeriidae 404735 SAR_Eukaryotes SAR_Eukaryotes 407 7.119999999999999e-109   NTclustered gi|134022092|gb|EF023442.1| 404735 g4076 i0 85.539 66.8778054862843 408 37 99 15 2 401 422 29 Eimeriidae environmental sample clone Amb_18S_1017 18S ribosomal RNA gene, partial sequence blastn 26818 407 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae   uncultured Eimeriidae
22746342 22746342 PRJNA330616_P_NODE_32898_length_156_cov_2.831776_g32489_i0 PRJNA330616 32898 156 2.831776 4.41757056 Sarcocystidae 5809 SAR_Eukaryotes SAR_Eukaryotes 102 1.26e-17   NTclustered gi|1005651880|gb|KU244521.1| 137009 g32489 i0 95.312 35.3461538461538 64 3 41 0 1 64 4248 4311 Sarcocystis zamani voucher BJ no.1 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 5514 102 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Sarcocystis Sarcocystis zamani
24615911 24615911 PRJNA330616_P_NODE_30380_length_163_cov_0.894737_g29971_i0 PRJNA330616 30380 163 0.894737 1.45842131 Eimeria mitis 44415 SAR_Eukaryotes SAR_Eukaryotes 58.4 2.92e-4   NTclustered gi|916505692|ref|XM_013497926.1| 44415 g29971 i0 100 5.68711656441718 31 0 19 0 2 32 197 227 Eimeria mitis uncharacterized protein (EMH_0061420), partial mRNA blastn 927 58.4 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria mitis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;