RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA330616" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA330616 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9317679 9317679 PRJNA330616_P_NODE_21848_length_181_cov_1.439394_g21439_i0 PRJNA330616 21848 181 1.439394 2.60530314 Candidatus Nomurabacteria bacterium 2052152 Bacteria Bacteria 191 3.12e-44   NTclustered gi|2258865392|gb|CP060227.1| 2052152 g21439 i0 88.125 376.21546961326 160 19 88 0 1 160 431376 431217 MAG: Candidatus Nomurabacteria bacterium isolate HK-STAS-PATE-22 chromosome, complete genome blastn 68095 191 1 Bacteria Bacteria candidate phyla   Candidatus Nomuraibacteriota         Candidatus Nomurabacteria bacterium
14418641 14418641 PRJNA330616_P_NODE_32472_length_161_cov_0.910714_g32063_i0 PRJNA330616 32472 161 0.910714 1.46624954 Candidatus Poribacteria bacterium 2026781 Bacteria Bacteria 54.7 0.004   NTclustered gi|2893358452|emb|OZ220744.1| 2026781 g32063 i0 96.97 2.35403726708075 33 0 21 1 42 73 3723596 3723628 MAG: Candidatus Poribacteria bacterium isolate 67f587a8-c379-43ee-8694-439c00dbce40 genome assembly, chromosome: 1 blastn 379 54.7 1 Bacteria Bacteria candidate phyla   Candidatus Poribacteria         Candidatus Poribacteria bacterium
20791219 20791219 PRJNA330616_P_NODE_27657_length_165_cov_0.879310_g27248_i0 PRJNA330616 27657 165 0.87931 1.4508615 Vermiphilus pyriformis 1763547 Bacteria Bacteria 159 7.9e-35   NTclustered gi|2207817285|gb|CP074345.1| 1763547 g27248 i0 84.118 17.5878787878788 170 21 100 3 1 165 974139 973971 MAG: Vermiphilus pyriformis isolate TW-EDP1-1 chromosome, complete genome blastn 2902 159 1 Bacteria Bacteria candidate phyla           Vermiphilus Vermiphilus pyriformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;