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contig_metadata

19 rows where analysis = "blastn", bioproject = "PRJNA330616" and tax_clade = "Amoebozoa"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 19 ✖

bioproject 1

  • PRJNA330616 · 19 ✖

analysis 1

  • blastn · 19 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1664435 1664435 PRJNA330616_P_NODE_27702_length_165_cov_0.879310_g27293_i0 PRJNA330616 27702 165 0.87931 1.4508615 Acytostelium subglobosum 361139 Evosea other_Eukaryota 87.9 3.78e-13   NTclustered gi|831790587|ref|XM_012903983.1| 1410327 g27293 i0 80 0.787878787878788 130 16 76 7 41 165 1139 1015 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 130 87.9 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
2940503 2940503 PRJNA330616_P_NODE_5003_length_378_cov_2.325228_g4594_i0 PRJNA330616 5003 378 2.325228 8.78936184 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 688 0   NTclustered gi|300078496|gb|GU001158.1| 5778 g4594 i0 99.471 26.6243386243386 378 2 100 0 1 378 1214 1591 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 10064 688 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
5493126 5493126 PRJNA330616_P_NODE_1665_length_705_cov_22.914634_g1298_i0 PRJNA330616 1665 705 22.914634 161.5481697 uncultured Rhizamoeba 1260765 Tubulinea other_Eukaryota 357 1.33e-93   NTclustered gi|511487963|gb|JX898537.1| 1260765 g1298 i0 80.658 33.4567375886525 486 72 68 20 152 629 472 1 Uncultured Rhizamoeba clone HCA_D03-34 28S ribosomal RNA gene, partial sequence blastn 23587 357 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae   uncultured Rhizamoeba
5493253 5493253 PRJNA330616_P_NODE_24285_length_171_cov_2.000000_g23876_i0 PRJNA330616 24285 171 2 3.42 Stemonitopsis subcaespitosa 1048528 Evosea other_Eukaryota 235 1.3199999999999998e-57   NTclustered gi|426281760|gb|JX681133.1| 1048528 g23876 i0 91.716 98.9239766081871 169 14 99 0 3 171 800 632 Stemonitopsis subcaespitosa actin gene, partial cds blastn 16916 235 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Stemonitida Stemonitidae Stemonitopsis Stemonitopsis subcaespitosa
7447207 7447207 PRJNA330616_P_NODE_21066_length_184_cov_1.511111_g20657_i0 PRJNA330616 21066 184 1.511111 2.78044424 Planopodium 2823620 Discosea other_Eukaryota 340 2.99e-89   NTclustered gi|330902850|gb|JF298244.1| 2773111 g20657 i0 100 62.6467391304348 184 0 100 0 1 184 990 807 Ovalopodium desertum clone 3702 18S ribosomal RNA gene, partial sequence blastn 11527 340 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Planopodium Planopodium desertum
8721896 8721896 PRJNA330616_P_NODE_2147_length_617_cov_2.813380_g1754_i0 PRJNA330616 2147 617 2.81338 17.3585546 Acanthamoeba 5754 Discosea other_Eukaryota 130 2.75e-25   NTclustered gi|28194602|gb|AF479546.1| 65658 g1754 i0 76.735 10.6385737439222 245 49 39 7 195 435 922 682 Acanthamoeba astronyxis strain ATCC 30137 16S small subunit ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product blastn 6564 130 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba astronyxis
9997632 9997632 PRJNA330616_P_NODE_828_length_1050_cov_15.271728_g560_i0 PRJNA330616 828 1050 15.271728 160.353144 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 1881 0   NTclustered gi|441475833|emb|FN562425.4| 688089 g560 i0 98.95 34.4419047619048 1048 11 99 0 3 1050 1061 14 Amoebozoa sp. SZA36 18S rRNA gene, isolate SZA36 blastn 36164 1892 0.994186046511628 Eukaryota Amoebozoa             Amoebozoa sp. SZA36
10593281 10593281 PRJNA330616_P_NODE_15889_length_210_cov_1.267081_g15480_i0 PRJNA330616 15889 210 1.267081 2.6608701 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 366 5.7900000000000005e-97   NTclustered gi|292559443|ref|NC_013986.1| 5778 g15480 i0 98.095 86.5666666666667 210 4 100 0 1 210 19499 19290 Hartmannella vermiformis mitochondrion, complete genome blastn 18179 366 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
10593453 10593453 PRJNA330616_P_NODE_27489_length_165_cov_1.318966_g27080_i0 PRJNA330616 27489 165 1.318966 2.1762939 Cochliopodium larifeili 1017091 Discosea other_Eukaryota 244 2.12e-60   NTclustered gi|330902858|gb|JF298255.1| 1017091 g27080 i0 93.976 13.6666666666667 166 3 100 5 1 165 762 921 Cochliopodium larifeili clone 904 18S ribosomal RNA gene, partial sequence blastn 2255 244 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium larifeili
11868233 11868233 PRJNA330616_P_NODE_17270_length_202_cov_1.228758_g16861_i0 PRJNA330616 17270 202 1.228758 2.48209116 Dictyostelium purpureum 5786 Evosea other_Eukaryota 97.1 8.01e-16   NTclustered gi|330822615|ref|XM_003291697.1| 5786 g16861 i0 83.019 0.787128712871287 106 18 52 0 33 138 771 876 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_39483), partial mRNA blastn 159 97.1 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
11868327 11868327 PRJNA330616_P_NODE_24330_length_171_cov_1.672131_g23921_i0 PRJNA330616 24330 171 1.672131 2.85934401 Acytostelium subglobosum 361139 Evosea other_Eukaryota 132 1.79e-26   NTclustered gi|831767714|ref|XM_012896732.1| 1410327 g23921 i0 82.877 6.63157894736842 146 25 85 0 26 171 822 677 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 1134 132 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
13143410 13143410 PRJNA330616_P_NODE_5771_length_349_cov_3.393333_g5362_i0 PRJNA330616 5771 349 3.393333 11.84273217 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 612 1.21e-170   NTclustered gi|909719645|gb|KT185625.1| 5778 g5362 i0 98.555 24.6848137535817 346 5 99 0 4 349 7086 6741 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 8615 612 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
15097168 15097168 PRJNA330616_P_NODE_20232_length_187_cov_2.768116_g19823_i0 PRJNA330616 20232 187 2.768116 5.17637692 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 335 1.4199999999999996e-87   NTclustered gi|300078496|gb|GU001158.1| 5778 g19823 i0 98.93 6.20855614973262 187 2 100 0 1 187 1144 958 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 1161 335 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
16967162 16967162 PRJNA330616_P_NODE_31594_length_161_cov_28.339286_g31185_i0 PRJNA330616 31594 161 28.339286 45.62625046 Dictyostelium discoideum 44689 Evosea other_Eukaryota 278 2.03e-70   NTclustered gi|1040460865|dbj|LC159244.1| 44689 g31185 i0 100 65.4347826086957 150 0 93 0 12 161 354 205 Dictyostelium discoideum genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 26S rRNA, partial and complete sequence, strain: WS-18 blastn 10535 278 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
19515669 19515669 PRJNA330616_P_NODE_31316_length_162_cov_0.902655_g30907_i0 PRJNA330616 31316 162 0.902655 1.4623011 Dictyostelium purpureum 5786 Evosea other_Eukaryota 137 3.6199999999999997e-28   NTclustered gi|330795499|ref|XM_003285763.1| 5786 g30907 i0 85.496 2.2716049382716 131 19 81 0 30 160 1918 2048 Dictyostelium purpureum P-type ATPase (DICPUDRAFT_149704), partial mRNA blastn 368 137 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
19515674 19515674 PRJNA330616_P_NODE_31536_length_162_cov_0.902655_g31127_i0 PRJNA330616 31536 162 0.902655 1.4623011 Cavenderia fasciculata 261658 Evosea other_Eukaryota 130 6.05e-26   NTclustered gi|470239817|ref|XM_004351826.1| 261658 g31127 i0 86.441 74.0617283950617 118 16 73 0 16 133 554 437 Cavenderia fasciculata glyceraldehyde-3-phosphate dehydrogenase (gpdA), partial mRNA blastn 11998 130 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
20791203 20791203 PRJNA330616_P_NODE_26477_length_166_cov_1.307692_g26068_i0 PRJNA330616 26477 166 1.307692 2.17076872 Heterostelium album 2086695 Evosea other_Eukaryota 154 3.699999999999999e-33   NTclustered gi|1160573212|ref|XM_020576784.1| 670386 g26068 i0 87.879 19.2168674698795 132 14 79 2 2 132 131 1 Polysphondylium pallidum PN500 calmodulin (calA), partial mRNA blastn 3190 154 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
22746260 22746260 PRJNA330616_P_NODE_24478_length_170_cov_29.809917_g24069_i0 PRJNA330616 24478 170 29.809917 50.6768589 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 110 8.32e-20   NTclustered gi|62865955|gb|AY929930.1| 325074 g24069 i0 91.358 49.2235294117647 81 6 47 1 69 148 305 225 Vannella sp. strain 4354/I internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence blastn 8368 110 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. strain 4354/I
24615760 24615760 PRJNA330616_P_NODE_20860_length_185_cov_1.463235_g20451_i0 PRJNA330616 20860 185 1.463235 2.70698475 Platyamoeba placida 3454475 Discosea other_Eukaryota 263 6.7e-66   NTclustered gi|33946348|gb|AY294153.1| 197527 g20451 i0 92.391 99.5243243243243 184 14 99 0 2 185 137 320 Platyamoeba placida actin mRNA, partial cds blastn 18412 263 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Platyamoeba Platyamoeba placida

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;