RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA326068" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 7 ✖

bioproject 1

  • PRJNA326068 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6172081 6172081 PRJNA326068_P_NODE_2125_length_744_cov_4.117483_g1607_i0 PRJNA326068 2125 744 4.117483 30.63407352 Trebouxia 13786 Plants Plants 536 1.6899999999999999e-147   NTclustered gi|1827552207|gb|MT274564.1| 300846 g1607 i0 94.302 48.0497311827957 351 18 47 2 1 350 196 545 Trebouxia crenulata strain CCAP_219_2 large subunit ribosomal RNA gene, partial sequence; chloroplast blastn 35749 536 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia crenulata
10593166 10593166 PRJNA326068_P_NODE_9889_length_320_cov_1.824742_g8930_i0 PRJNA326068 9889 320 1.824742 5.8391744 Myrmecia israelensis 3171 Plants Plants 316 9.64e-82   NTclustered gi|723456786|ref|NC_025525.1| 3171 g8930 i0 97.312 79.1625 186 5 58 0 2 187 2254 2439 Myrmecia israelensis culture-collection UTEX:1181 chloroplast, complete genome blastn 25332 316 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Myrmecia Myrmecia israelensis
15097010 15097010 PRJNA326068_P_NODE_10292_length_309_cov_38.235714_g9332_i0 PRJNA326068 10292 309 38.235714 118.14835626 Trebouxia 13786 Plants Plants 488 1.86e-133   NTclustered gi|2236816602|gb|ON479854.1| 160068 g9332 i0 95.161 99.9190938511327 310 13 100 2 1 309 12 320 Trebouxia aggregata clone LN-K1 small subunit ribosomal RNA gene, partial sequence blastn 30875 488 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia aggregata
15692091 15692091 PRJNA326068_P_NODE_17353_length_193_cov_2.176829_g16390_i0 PRJNA326068 17353 193 2.176829 4.20127997 Chlorella vulgaris 3077 Plants Plants 213 7.21e-51   NTclustered gi|77627727|dbj|AB237642.1| 3077 g16390 i0 86.667 102.756476683938 195 23 100 3 1 193 1913 2106 Chlorella vulgaris NIES:227 gene for 28S ribosomal RNA, partial sequence blastn 19832 213 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella vulgaris
19515299 19515299 PRJNA326068_P_NODE_18436_length_173_cov_3.458333_g17473_i0 PRJNA326068 18436 173 3.458333 5.98291609 Myrmecia israelensis 3171 Plants Plants 320 3.61e-83   NTclustered gi|723456786|ref|NC_025525.1| 3171 g17473 i0 100 137.98265895953801 173 0 100 0 1 173 5106 4934 Myrmecia israelensis culture-collection UTEX:1181 chloroplast, complete genome blastn 23871 320 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Myrmecia Myrmecia israelensis
20195276 20195276 PRJNA326068_P_NODE_7816_length_376_cov_102.711816_g6873_i0 PRJNA326068 7816 376 102.711816 386.19642816 Eukaryota 2759 Plants Plants 673 0   NTclustered gi|1714003650|gb|MN243923.1| 3079 g6873 i0 98.936 99.718085106383 376 4 100 0 1 376 871 496 Chlorella sp. isolate CAVR01 small subunit ribosomal RNA gene, partial sequence blastn 37494 673 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sp.
23341344 23341344 PRJNA326068_P_NODE_2119_length_745_cov_5.008380_g1601_i0 PRJNA326068 2119 745 5.00838 37.312431 Trebouxia aggregata 160068 Plants Plants 459 3.7599999999999996e-124   NTclustered gi|162134340|gb|EU123979.1| 160068 g1601 i0 84.156 129.276510067114 486 64 64 11 79 555 2265 1784 Trebouxia aggregata strain SAG 219-1d large subunit ribosomal RNA (rrl) gene, complete sequence; and putative site-specific DNA endonuclease (orf210) and hypothetical protein (orf277) genes, complete cds; chloroplast blastn 96311 459 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia aggregata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;