RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA326068" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA326068 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6767040 6767040 PRJNA326068_P_NODE_2106_length_746_cov_29.677824_g1590_i0 PRJNA326068 2106 746 29.677824 221.39656704 Copromyxa protea 931554 Tubulinea other_Eukaryota 760 0   NTclustered gi|313506263|gb|GU938869.1| 931554 g1590 i0 85.166 81.7935656836461 755 97 99 12 1 745 1337 588 Copromyxa protea strain CF08-8-5 18S small subunit ribosomal RNA gene, partial sequence blastn 61018 760 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
8721734 8721734 PRJNA326068_P_NODE_13007_length_251_cov_2.436937_g12044_i0 PRJNA326068 13007 251 2.436937 6.11671187 Dictyostelium 5782 Evosea other_Eukaryota 187 5.98e-43   NTclustered gi|7198|emb|X03283.1| 44689 g12044 i0 81.624 16.2549800796813 234 35 92 7 3 232 257 28 Dictyostelium discoideum gene for actin A3-S1 blastn 4080 187 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
14418249 14418249 PRJNA326068_P_NODE_1052_length_1008_cov_12.241062_g751_i0 PRJNA326068 1052 1008 12.241062 123.38990496 uncultured Rhizamoeba 1260765 Tubulinea other_Eukaryota 322 7.06e-83   NTclustered gi|511487963|gb|JX898537.1| 1260765 g751 i0 82.552 17.6626984126984 384 50 37 13 78 453 1 375 Uncultured Rhizamoeba clone HCA_D03-34 28S ribosomal RNA gene, partial sequence blastn 17804 322 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae   uncultured Rhizamoeba
19515304 19515304 PRJNA326068_P_NODE_19976_length_151_cov_4.418033_g19013_i0 PRJNA326068 19976 151 4.418033 6.67122983 Hartmannella cantabrigiensis 239731 Tubulinea other_Eukaryota 215 1.49e-51   NTclustered gi|33946340|gb|AY294147.1| 239731 g19013 i0 92.208 59.0066225165563 154 8 100 4 1 151 1729 1881 Hartmannella cantabrigiensis small subunit ribosomal RNA gene, partial sequence blastn 8910 215 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Hartmannella Hartmannella cantabrigiensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;