RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA322517" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA322517 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
389164 389164 PRJNA322517_P_NODE_1221_length_453_cov_3.908416_g1199_i0 PRJNA322517 1221 453 3.908416 17.70512448 Cochliopodium kieliense 1512276 Discosea other_Eukaryota 704 0   NTclustered gi|659103926|gb|KJ569726.1| 1512276 g1199 i0 96.092 57.8167770419426 435 11 95 6 1 430 437 4 Cochliopodium kieliense clone 9605 18S ribosomal RNA gene, partial sequence blastn 26191 704 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium kieliense
1069158 1069158 PRJNA322517_P_NODE_2221_length_321_cov_2.915441_g2199_i0 PRJNA322517 2221 321 2.915441 9.35856561 Cochliopodium 313557 Discosea other_Eukaryota 377 4.37e-100   NTclustered gi|59876024|gb|AY785057.1| 313998 g2199 i0 87.915 23.0654205607477 331 27 100 12 1 321 363 36 Cochliopodium sp. strain Kiel 18S ribosomal RNA gene, partial sequence blastn 7404 377 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium sp. strain Kiel
4216592 4216592 PRJNA322517_P_NODE_4524_length_184_cov_1.303704_g4502_i0 PRJNA322517 4524 184 1.303704 2.39881536 Cochliopodium minus 313997 Discosea other_Eukaryota 248 1.86e-61   NTclustered gi|1914009701|gb|MT975600.1| 313997 g4502 i0 91.62 99.1847826086957 179 15 97 0 3 181 613 791 Cochliopodium minus clone 1 actin gene, partial cds blastn 18250 248 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
8721705 8721705 PRJNA322517_P_NODE_2547_length_295_cov_3.073171_g2525_i0 PRJNA322517 2547 295 3.073171 9.06585445 Cochliopodium 313557 Discosea other_Eukaryota 427 3.8899999999999996e-115   NTclustered gi|59876024|gb|AY785057.1| 313998 g2525 i0 97.233 66.5084745762712 253 6 85 1 1 252 341 593 Cochliopodium sp. strain Kiel 18S ribosomal RNA gene, partial sequence blastn 19620 427 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium sp. strain Kiel

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;