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contig_metadata

13 rows where analysis = "blastn", bioproject = "PRJNA316313" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 13 ✖

tax_kingdom 1

bioproject 1

  • PRJNA316313 · 13 ✖

analysis 1

  • blastn · 13 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1661060 1661060 PRJNA316313_P_NODE_174642_length_187_cov_3.913333_g173256_i0 PRJNA316313 174642 187 3.913333 7.31793271 Treponema vincentii 69710 Bacteria Bacteria 141 3.32e-29   NTclustered gi|2265136109|gb|CP051197.1| 69710 g173256 i0 100 2.03208556149733 76 0 81 0 112 187 215418 215343 Treponema vincentii strain OMZ 802 chromosome, complete genome blastn 380 141 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema vincentii
2938903 2938903 PRJNA316313_P_NODE_493463_length_150_cov_4.044248_g492077_i0 PRJNA316313 493463 150 4.044248 6.066372 Treponema vincentii 69710 Bacteria Bacteria 261 1.86e-65   NTclustered gi|2265136109|gb|CP051197.1| 69710 g492077 i0 98 13.9666666666667 150 3 100 0 1 150 1495509 1495658 Treponema vincentii strain OMZ 802 chromosome, complete genome blastn 2095 261 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema vincentii
3619116 3619116 PRJNA316313_P_NODE_456003_length_151_cov_3.403509_g454617_i0 PRJNA316313 456003 151 3.403509 5.13929859 Treponema 157 Bacteria Bacteria 145 1.98e-30   NTclustered gi|2265141765|gb|CP051199.1| 2563664 g454617 i0 100 18.2847682119205 78 0 100 0 1 78 2784469 2784546 Treponema sp. OMZ 788 chromosome, complete genome blastn 2761 145 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp. OMZ 788
7446229 7446229 PRJNA316313_P_NODE_407926_length_151_cov_6.271930_g406540_i0 PRJNA316313 407926 151 6.27193 9.4706143 Treponema 157 Bacteria Bacteria 124 2.5699999999999997e-24   NTclustered gi|2265193197|gb|CP058347.1| 158 g406540 i0 96.053 9.05960264900662 76 3 50 0 76 151 2315048 2314973 Treponema denticola strain OKA3 chromosome, complete genome blastn 1368 124 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema denticola
8041538 8041538 PRJNA316313_P_NODE_497487_length_150_cov_3.681416_g496101_i0 PRJNA316313 497487 150 3.681416 5.522124 Treponema denticola 158 Bacteria Bacteria 244 1.88e-60   NTclustered gi|2265193197|gb|CP058347.1| 158 g496101 i0 95.541 27.14 157 0 100 1 1 150 2774549 2774393 Treponema denticola strain OKA3 chromosome, complete genome blastn 4071 244 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema denticola
11271772 11271772 PRJNA316313_P_NODE_483609_length_150_cov_5.407080_g482223_i0 PRJNA316313 483609 150 5.40708 8.11062 Treponema 157 Bacteria Bacteria 111 1.99e-20   NTclustered gi|1996291085|gb|CP027017.1| 58231 g482223 i0 93.333 3.15333333333333 75 5 50 0 1 75 2489682 2489756 Treponema medium strain T19 chromosome, complete genome blastn 473 111 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema medium
13139760 13139760 PRJNA316313_P_NODE_116571_length_194_cov_2.980892_g115185_i0 PRJNA316313 116571 194 2.980892 5.78293048 Turneriella parva 29510 Bacteria Bacteria 63.9 7.74e-6   NTclustered gi|390609540|gb|CP002959.1| 869212 g115185 i0 93.023 0.221649484536082 43 3 22 0 16 58 2968284 2968242 Turneriella parva DSM 21527, complete genome blastn 43 63.9 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae Turneriella Turneriella parva
14416715 14416715 PRJNA316313_P_NODE_423392_length_151_cov_4.728070_g422006_i0 PRJNA316313 423392 151 4.72807 7.1393857 Treponema denticola 158 Bacteria Bacteria 76.8 7.31e-10   NTclustered gi|2265166044|gb|CP051303.1| 158 g422006 i0 94 0.33112582781457 50 3 33 0 25 74 399915 399964 Treponema denticola strain OT2B chromosome, complete genome blastn 50 76.8 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema denticola
14416753 14416753 PRJNA316313_P_NODE_430992_length_151_cov_4.315789_g429606_i0 PRJNA316313 430992 151 4.315789 6.51684139 Treponema sp. OMZ 803 120682 Bacteria Bacteria 228 1.9099999999999994e-55   NTclustered gi|2265127813|gb|CP051195.1| 120682 g429606 i0 93.168 9.55629139072848 161 1 100 5 1 151 1502737 1502577 Treponema sp. OMZ 803 strain BF2M chromosome, complete genome blastn 1443 228 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp. OMZ 803
15689505 15689505 PRJNA316313_P_NODE_257813_length_187_cov_2.760000_g256427_i0 PRJNA316313 257813 187 2.76 5.1612 Treponema denticola 158 Bacteria Bacteria 141 3.32e-29   NTclustered gi|2277007739|gb|CP038800.1| 158 g256427 i0 100 1.62566844919786 76 0 81 0 112 187 765562 765487 Treponema denticola strain ATCC 700768 chromosome, complete genome blastn 304 141 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema denticola
15690780 15690780 PRJNA316313_P_NODE_463433_length_151_cov_3.236842_g462047_i0 PRJNA316313 463433 151 3.236842 4.88763142 Treponema denticola 158 Bacteria Bacteria 126 7.16e-25   NTclustered gi|2265199313|gb|CP058624.1| 158 g462047 i0 96.104 1.88079470198676 77 3 51 0 75 151 2770023 2770099 Treponema denticola strain OMZ 854 chromosome, complete genome blastn 284 126 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema denticola
20193950 20193950 PRJNA316313_P_NODE_292616_length_187_cov_2.480000_g291230_i0 PRJNA316313 292616 187 2.48 4.6376 Treponema 157 Bacteria Bacteria 141 3.32e-29   NTclustered gi|2265136109|gb|CP051197.1| 69710 g291230 i0 100 4.82887700534759 76 0 80 0 1 76 201238 201313 Treponema vincentii strain OMZ 802 chromosome, complete genome blastn 903 141 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema vincentii
24612318 24612318 PRJNA316313_P_NODE_122840_length_190_cov_3.686275_g121454_i0 PRJNA316313 122840 190 3.686275 7.0039225 Leptospira santarosai 28183 Bacteria Bacteria 62.1 2.71e-5   NTclustered gi|1370526542|gb|CP027843.1| 28183 g121454 i0 88.235 7.99473684210526 51 6 27 0 58 108 2224035 2223985 Leptospira santarosai strain U160 chromosome I blastn 1519 62.1 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae Leptospira Leptospira santarosai

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;