RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA316313" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA316313 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14417062 14417062 PRJNA316313_P_NODE_484372_length_150_cov_5.256637_g482986_i0 PRJNA316313 484372 150 5.256637 7.8849555 Caenorhabditis elegans 6239 Nematoda Nematoda 75 2.61e-9   NTclustered gi|3810720|emb|AL032641.1| 6239 g482986 i0 95.652 56.44 46 2 37 0 105 150 9331 9376 Caenorhabditis elegans YAC Y5F2A, complete sequence blastn 8466 75 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
23339157 23339157 PRJNA316313_P_NODE_327079_length_187_cov_2.006667_g325693_i0 PRJNA316313 327079 187 2.006667 3.75246729 Caenorhabditis elegans 6239 Nematoda Nematoda 141 3.32e-29   NTclustered gi|687866032|emb|LK927877.1| 6239 g325693 i0 100 2.03208556149733 76 0 81 0 112 187 78254 78179 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_contig0000051 blastn 380 141 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
24614939 24614939 PRJNA316313_S_NODE_400_length_314_cov_3.480144_g397_i0 PRJNA316313 400 314 3.480144 10.92765216 Strongyloides ratti 34506 Nematoda Nematoda 303 7.35e-78   NTclustered gi|1376144465|ref|XM_024652690.1| 34506 g397 i0 85.05 96.859872611465 301 41 95 4 7 305 330 32 Strongyloides ratti Actin, alpha cardiac muscle 1 (SRAE_2000170700), partial mRNA blastn 30414 303 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;