RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA316313" and tax_kingdom = "Bamfordvirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Bamfordvirae · 5 ✖

bioproject 1

  • PRJNA316313 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1067751 1067751 PRJNA316313_P_NODE_261121_length_187_cov_2.713333_g259735_i0 PRJNA316313 261121 187 2.713333 5.07393271 root 1 Root_unresolved Root_unresolved 141 3.32e-29   NTclustered gi|2452970428|gb|OQ518271.1| 10515 g259735 i0 100 80.8770053475936 76 0 81 0 112 187 12762 12837 Human adenovirus 2 isolate HAdV-C2/USA/8A5/2011, complete genome blastn 15124 141 1 Viruses   Bamfordvirae Preplasmiviricota Pharingeaviricetes Rowavirales Adenoviridae Mastadenovirus Mastadenovirus caesari
7445137 7445137 PRJNA316313_P_NODE_105066_length_201_cov_20.176829_g103680_i0 PRJNA316313 105066 201 20.176829 40.55542629 root 1 Root_unresolved Root_unresolved 357 3.31e-94   NTclustered gi|2620236085|gb|OR777220.1| 10515 g103680 i0 99.49 97.5124378109453 196 1 98 0 1 196 15028 15223 Human adenovirus 2 isolate HAdV-C2/USA/13R1/2017, complete genome blastn 19600 357 1 Viruses   Bamfordvirae Preplasmiviricota Pharingeaviricetes Rowavirales Adenoviridae Mastadenovirus Mastadenovirus caesari
12546035 12546035 PRJNA316313_P_NODE_19830_length_378_cov_9.310850_g18464_i0 PRJNA316313 19830 378 9.31085 35.195013 root 1 Root_unresolved Root_unresolved 185 3.4e-42   NTclustered gi|2452970428|gb|OQ518271.1| 10515 g18464 i0 100 91.1243386243386 100 0 92 0 191 290 18402 18303 Human adenovirus 2 isolate HAdV-C2/USA/8A5/2011, complete genome blastn 34445 185 1 Viruses   Bamfordvirae Preplasmiviricota Pharingeaviricetes Rowavirales Adenoviridae Mastadenovirus Mastadenovirus caesari
16964775 16964775 PRJNA316313_P_NODE_35494_length_294_cov_15.178988_g34113_i0 PRJNA316313 35494 294 15.178988 44.62622472 Mastadenovirus caesari 3241411 Viruses Viruses 436 6.439999999999999e-118   NTclustered gi|1967465804|gb|MT950711.1| 129951 g34113 i0 92.359 102.380952380952 301 12 99 3 1 291 638 339 Human mastadenovirus C isolate HAdV C1 GZ20190527/650 penton base protein gene, partial cds blastn 30100 436 1 Viruses   Bamfordvirae Preplasmiviricota Pharingeaviricetes Rowavirales Adenoviridae Mastadenovirus Mastadenovirus caesari
20193522 20193522 PRJNA316313_P_NODE_16576_length_412_cov_11.074667_g15223_i0 PRJNA316313 16576 412 11.074667 45.62762804 root 1 Root_unresolved Root_unresolved 676 0   NTclustered gi|2452970428|gb|OQ518271.1| 10515 g15223 i0 97.059 99.0291262135922 408 1 99 2 6 412 11153 11550 Human adenovirus 2 isolate HAdV-C2/USA/8A5/2011, complete genome blastn 40800 682 0.991202346041056 Viruses   Bamfordvirae Preplasmiviricota Pharingeaviricetes Rowavirales Adenoviridae Mastadenovirus Mastadenovirus caesari

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;