RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA316313" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 4 ✖

bioproject 1

  • PRJNA316313 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13140529 13140529 PRJNA316313_P_NODE_260511_length_187_cov_2.720000_g259125_i0 PRJNA316313 260511 187 2.72 5.0864 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 63.9 7.39e-6   NTclustered gi|2031939661|emb|OD957602.1| 5763 g259125 i0 83.099 0.379679144385027 71 11 38 1 6 76 214 283 Naegleria fowleri Karachi_NF001 strain blastn 71 63.9 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
16964395 16964395 PRJNA316313_P_NODE_292114_length_187_cov_2.480000_g290728_i0 PRJNA316313 292114 187 2.48 4.6376 Trypanosoma theileri 67003 Euglenozoa other_Eukaryota 52.8 0.016   NTclustered gi|1624754635|ref|XM_029028246.1| 67003 g290728 i0 100 0.149732620320856 28 0 15 0 132 159 955 982 Trypanosoma theileri uncharacterized protein (TM35_000282150), partial mRNA blastn 28 52.8 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma theileri
18918841 18918841 PRJNA316313_P_NODE_146855_length_187_cov_4.846667_g145469_i0 PRJNA316313 146855 187 4.846667 9.06326729 root 1 Root_unresolved Root_unresolved 141 3.32e-29   NTclustered gi|41223393|tpe|BN000109.1| 5664 g145469 i0 100 11.5561497326203 76 0 81 0 1 76 325 400 TPA_inf: Leishmania major tag gene for putative 3-methyladenine DNA glycosylase blastn 2161 141 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania major
18920168 18920168 PRJNA316313_P_NODE_68215_length_234_cov_3.649746_g66829_i0 PRJNA316313 68215 234 3.649746 8.54040564 root 1 Root_unresolved Root_unresolved 54.7 0.006   NTclustered gi|2031939376|emb|OD957540.1| 5763 g66829 i0 100 1.23931623931624 29 0 12 0 91 119 640 612 Naegleria fowleri Karachi_NF001 strain blastn 290 54.7 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;