RNAquarium Metadata Server
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contig_metadata

13 rows where analysis = "blastn", bioproject = "PRJNA315399" and tax_phylum = "Kitrinoviricota"

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tax_superkingdom 1

tax_phylum 1

  • Kitrinoviricota · 13 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA315399 · 13 ✖

analysis 1

  • blastn · 13 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
385857 385857 PRJNA315399_S_NODE_95141_length_181_cov_1.881944_g94940_i0 PRJNA315399 95141 181 1.881944 3.40631864 Alphaendornavirus capsici 3426171 Viruses Viruses 303 3.84e-78   NTclustered gi|390608729|gb|JQ951943.1| 354328 g94940 i0 100 27.1657458563536 164 0 91 0 18 181 11947 12110 Bell pepper endornavirus strain IS RNA-dependent RNA polymerase (RdRp) gene, complete cds blastn 4917 303 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Endornaviridae Alphaendornavirus Alphaendornavirus capsici
1066892 1066892 PRJNA315399_S_NODE_33961_length_239_cov_5.866337_g33760_i0 PRJNA315399 33961 239 5.866337 14.02054543 Tobamovirus 12234 Viruses Viruses 409 1.11e-109   NTclustered gi|1821461776|gb|MN267897.1| 12239 g33760 i0 98.696 90.5271966527197 230 3 96 0 1 230 3797 3568 Pepper mild mottle virus isolate PMMoV_WW17-E1-Nben-pos, complete genome blastn 21636 409 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus capsici
2936136 2936136 PRJNA315399_S_NODE_6503_length_404_cov_5.880109_g6304_i0 PRJNA315399 6503 404 5.880109 23.75564036 Potexvirus pepini 3433856 Viruses Viruses 741 0   NTclustered gi|79676039|emb|AM109896.1| 112229 g6304 i0 100 97.1559405940594 401 0 99 0 4 404 5961 6361 Pepino mosaic virus complete genome, isolate SM.74 blastn 39251 741 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus pepini
4211651 4211651 PRJNA315399_S_NODE_131664_length_166_cov_4.093023_g131463_i0 PRJNA315399 131664 166 4.093023 6.79441818 Potexvirus ecstulipae 3433839 Viruses Viruses 202 1.2999999999999998e-47   NTclustered gi|56792907|gb|AY842510.1| 167132 g131463 i0 89.024 2.98795180722892 164 17 99 1 3 166 355 517 Tulip virus X coat protein gene, partial cds blastn 496 202 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus ecstulipae
4212320 4212320 PRJNA315399_S_NODE_27084_length_255_cov_9.532110_g26883_i0 PRJNA315399 27084 255 9.53211 24.3068805 Avellana capillovirus 1 2794427 Viruses Viruses 309 1.25e-79   NTclustered gi|1950492684|gb|MW328729.1| 2794427 g26883 i0 90.295 0.929411764705882 237 21 93 2 14 249 6195 6430 Avellana capillovirus 1 polyprotein and MP genes, complete cds blastn 237 309 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Capillovirus Avellana capillovirus 1
5488160 5488160 PRJNA315399_S_NODE_148265_length_161_cov_4.524194_g148064_i0 PRJNA315399 148265 161 4.524194 7.28395234 Wuhan aphid virus 2 1746068 Viruses Viruses 159 7.66e-35   NTclustered gi|2444492076|gb|OP797725.1| 1746068 g148064 i0 87.591 0.850931677018634 137 17 85 0 25 161 4 140 Wuhan aphid virus 2 isolate 12842-WAV2S4 segment 4 hypothetical protein (VP3) gene, partial cds blastn 137 159 1 Viruses Jingmenvirus group Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae   Wuhan aphid virus 2
9994966 9994966 PRJNA315399_S_NODE_28208_length_252_cov_9.562791_g28007_i0 PRJNA315399 28208 252 9.562791 24.09823332 Potexvirus 12176 Viruses Viruses 440 4.1699999999999984e-119   NTclustered gi|1805119874|gb|MN038406.1| 112229 g28007 i0 99.585 59.2063492063492 241 1 96 0 12 252 1131 1371 Pepino mosaic virus strain MZ3, complete genome blastn 14920 440 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus pepini
14413222 14413222 PRJNA315399_S_NODE_119432_length_170_cov_6.218045_g119231_i0 PRJNA315399 119432 170 6.218045 10.5706765 Avellana capillovirus 1 2794427 Viruses Viruses 169 1.35e-37   NTclustered gi|1950492684|gb|MW328729.1| 2794427 g119231 i0 86.755 0.888235294117647 151 20 89 0 15 165 6037 6187 Avellana capillovirus 1 polyprotein and MP genes, complete cds blastn 151 169 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Capillovirus Avellana capillovirus 1
15688197 15688197 PRJNA315399_S_NODE_6193_length_410_cov_67.820375_g5995_i0 PRJNA315399 6193 410 67.820375 278.0635375 Bromovirus BMV 3427622 Viruses Viruses 734 0   NTclustered gi|2239526092|gb|MW568015.1| 12302 g5995 i0 99.504 36.2560975609756 403 2 98 0 1 403 1204 802 Brome mosaic virus isolate BMV-B movement protein and coat protein (CP) genes, complete cds blastn 14865 734 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Bromoviridae Bromovirus Bromovirus BMV
16369133 16369133 PRJNA315399_S_NODE_125273_length_168_cov_5.351145_g125072_i0 PRJNA315399 125273 168 5.351145 8.9899236 Potexvirus 12176 Viruses Viruses 305 9.81e-79   NTclustered gi|2106121581|gb|MW848530.1| 112229 g125072 i0 99.405 49.9761904761905 168 1 100 0 1 168 1290 1123 Pepino mosaic virus isolate NGSTPS18, complete genome blastn 8396 305 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus pepini
22060665 22060665 PRJNA315399_S_NODE_11098_length_337_cov_8.966667_g10897_i0 PRJNA315399 11098 337 8.966667 30.21766779 Potexvirus trifolii 3433859 Viruses Viruses 558 1.54e-154   NTclustered gi|2054359742|gb|MW248353.1| 12188 g10897 i0 97.833 28.2077151335312 323 7 96 0 13 335 5843 5521 White clover mosaic virus isolate DSMZ PV-0310 replication-associated protein (ORF1), triple gene block 1 protein (ORF2), triple gene block 2 protein (ORF3), triple gene block 3 protein (ORF4), and capsid protein (ORF5) genes, complete cds blastn 9506 558 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus trifolii
22061103 22061103 PRJNA315399_S_NODE_164678_length_157_cov_3.133333_g164477_i0 PRJNA315399 164678 157 3.133333 4.91933281 Wuhan aphid virus 2 1746068 Viruses Viruses 187 3.3999999999999993e-43   NTclustered gi|943496531|gb|KR902726.1| 1746068 g164477 i0 88.462 1.98726114649682 156 16 99 2 2 156 972 818 Wuhan aphid virus 2 strain WHYC-2 segment 2, complete sequence blastn 312 187 1 Viruses Jingmenvirus group Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae   Wuhan aphid virus 2
24610447 24610447 PRJNA315399_S_NODE_115000_length_172_cov_3.140741_g114799_i0 PRJNA315399 115000 172 3.140741 5.40207452 Tobamovirus tabaci 3432891 Viruses Viruses 313 5.989999999999998e-81   NTclustered gi|2813525801|dbj|LC846392.1| 12242 g114799 i0 99.419 100 172 1 100 0 1 172 3810 3639 Tobacco mosaic virus TMV-Du-CNU1 genomic RNA, complete genome blastn 17200 313 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tabaci

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;