RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA315399" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA315399 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2936140 2936140 PRJNA315399_S_NODE_65223_length_200_cov_2.380368_g65022_i0 PRJNA315399 65223 200 2.380368 4.760736 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 132 2.17e-26   NTclustered gi|2893358400|emb|OZ220691.1| 2026742 g65022 i0 82.877 2.56 146 25 73 0 16 161 1590904 1591049 MAG: Gemmatimonadota bacterium isolate 1766b9ea-3269-4cc1-97f5-695b05480569 genome assembly, chromosome: 1 blastn 512 132 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
22058337 22058337 PRJNA315399_P_NODE_208918_length_184_cov_5.074830_g208470_i0 PRJNA315399 208918 184 5.07483 9.3376872 Gemmatimonas aurantiaca 173480 Bacteria Bacteria 56.5 0.001   NTclustered gi|226088597|dbj|AP009153.1| 379066 g208470 i0 94.444 0.195652173913043 36 2 20 0 15 50 1020544 1020579 Gemmatimonas aurantiaca T-27 DNA, complete genome blastn 36 56.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;