RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA315399" and tax_phylum = "Fibrobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA315399 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9311011 9311011 PRJNA315399_P_NODE_38908_length_254_cov_3.668203_g38461_i0 PRJNA315399 38908 254 3.668203 9.31723562 Fibrobacterota bacterium 2052160 Bacteria Bacteria 52.8 0.023   NTclustered gi|1958056460|gb|CP064986.1| 2052160 g38461 i0 100 0.110236220472441 28 0 11 0 26 53 4488437 4488410 Fibrobacteres bacterium isolate Fred_18-Q3-R57-64_MAXAC.109_cln chromosome, complete genome blastn 28 52.8 1 Bacteria FCB group Pseudomonadati Fibrobacterota         Fibrobacterota bacterium
14412269 14412269 PRJNA315399_P_NODE_451672_length_156_cov_3.201681_g451224_i0 PRJNA315399 451672 156 3.2016810000000002 4.99462236 uncultured Fibrobacteria bacterium 1758207 Bacteria Bacteria 198 1.56e-46   NTclustered gi|2874253984|emb|OY970309.1| 1758207 g451224 i0 93.893 53.5769230769231 131 8 84 0 8 138 1594904 1594774 MAG: uncultured Fibrobacteria bacterium isolate MFD05502.bin.1.3 genome assembly, chromosome: 1 blastn 8358 198 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria       uncultured Fibrobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;