RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "blastn", bioproject = "PRJNA315399" and tax_phylum = "Candidatus Levyibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Levyibacteriota · 1 ✖

tax_clade 1

bioproject 1

  • PRJNA315399 · 1 ✖

analysis 1

  • blastn · 1 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22059952 22059952 PRJNA315399_P_NODE_474898_length_153_cov_7.577586_g474450_i0 PRJNA315399 474898 153 7.577586 11.59370658 Candidatus Levyibacteriota bacterium 2052151 Bacteria Bacteria 65.8 1.61e-6   NTclustered gi|2874253967|emb|OY970292.1| 2052151 g474450 i0 95.238 0.274509803921569 42 1 27 1 9 49 981338 981297 MAG: Candidatus Levybacteria bacterium isolate MFD01916.bin.c.8 genome assembly, chromosome: 1 blastn 42 65.8 1 Bacteria Bacteria candidate phyla   Candidatus Levyibacteriota         Candidatus Levyibacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;