RNAquarium Metadata Server
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contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJNA315399" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 10 ✖

bioproject 1

  • PRJNA315399 · 10 ✖

analysis 1

  • blastn · 10 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
383873 383873 PRJNA315399_P_NODE_68261_length_219_cov_5.620879_g67813_i0 PRJNA315399 68261 219 5.620879 12.30972501 Spiretrovirus homo8524 3117321 Viruses Viruses 363 7.88e-96   NTclustered gi|2710393193|tpg|BK066703.1| 3117321 g67813 i0 100 0.894977168949772 196 0 89 0 16 211 1451 1646 MAG TPA_asm: Spiretrovirus homo8524 isolate Spiretro8524 genomic sequence blastn 196 363 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales     Spiretrovirus homo8524
4209189 4209189 PRJNA315399_P_NODE_21824_length_290_cov_6.407115_g21381_i0 PRJNA315399 21824 290 6.407115 18.5806335 Spiretrovirus homo8524 3117321 Viruses Viruses 322 1.85e-83   NTclustered gi|2710393193|tpg|BK066703.1| 3117321 g21381 i0 99.435 1.69310344827586 177 1 83 0 96 272 7920 8096 MAG TPA_asm: Spiretrovirus homo8524 isolate Spiretro8524 genomic sequence blastn 491 322 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales     Spiretrovirus homo8524
4893848 4893848 PRJNA315399_P_NODE_380224_length_164_cov_2.866142_g379776_i0 PRJNA315399 380224 164 2.866142 4.70047288 root 1 Root_unresolved Root_unresolved 167 4.689999999999999e-37   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g379776 i0 98.925 55.4939024390244 93 1 57 0 1 93 2688 2596 Moloney murine leukemia virus, complete genome blastn 9101 167 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
10586079 10586079 PRJNA315399_P_NODE_274789_length_180_cov_3.608392_g274341_i0 PRJNA315399 274789 180 3.608392 6.4951056 Spiretrovirus homo8524 3117321 Viruses Viruses 139 1.14e-28   NTclustered gi|2710393193|tpg|BK066703.1| 3117321 g274341 i0 100 0.794444444444444 75 0 79 0 93 167 2551 2625 MAG TPA_asm: Spiretrovirus homo8524 isolate Spiretro8524 genomic sequence blastn 143 139 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales     Spiretrovirus homo8524
12544178 12544178 PRJNA315399_P_NODE_236010_length_182_cov_10.648276_g235562_i0 PRJNA315399 236010 182 10.648276 19.37986232 root 1 Root_unresolved Root_unresolved 287 3.9e-73   NTclustered gi|2787679944|gb|PQ144805.1| 11676 g235562 i0 100 85.1648351648352 155 0 85 0 11 165 1345 1191 HIV-1 isolate Hu_NL_LA_M3171 from USA gag protein (gag) and pol protein (pol) genes, partial cds blastn 15500 287 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
13136770 13136770 PRJNA315399_P_NODE_399751_length_161_cov_8.838710_g399303_i0 PRJNA315399 399751 161 8.83871 14.2303231 Spiretrovirus homo8524 3117321 Viruses Viruses 231 1.5999999999999997e-56   NTclustered gi|2710393193|tpg|BK066703.1| 3117321 g399303 i0 98.473 0.813664596273292 131 2 81 0 21 151 4595 4725 MAG TPA_asm: Spiretrovirus homo8524 isolate Spiretro8524 genomic sequence blastn 131 231 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales     Spiretrovirus homo8524
14410377 14410377 PRJNA315399_P_NODE_148972_length_189_cov_3.296053_g148524_i0 PRJNA315399 148972 189 3.296053 6.22954017 Spiretrovirus homo8524 3117321 Viruses Viruses 315 1.8699999999999998e-81   NTclustered gi|2710393193|tpg|BK066703.1| 3117321 g148524 i0 99.422 1.71428571428571 173 1 92 0 7 179 46 218 MAG TPA_asm: Spiretrovirus homo8524 isolate Spiretro8524 genomic sequence blastn 324 315 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales     Spiretrovirus homo8524
14412820 14412820 PRJNA315399_P_NODE_69472_length_218_cov_5.928177_g69024_i0 PRJNA315399 69472 218 5.928177 12.92342586 Lentivirus humimdef1 3418650 Viruses Viruses 52.8 0.019   NTclustered gi|2599476811|gb|OR521394.1| 11676 g69024 i0 100 0.128440366972477 28 0 13 0 132 159 441 414 HIV-1 clone 2021NB034 from China pol protein (pol) gene, partial cds blastn 28 52.8 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
17644626 17644626 PRJNA315399_S_NODE_60154_length_204_cov_4.251497_g59953_i0 PRJNA315399 60154 204 4.251497 8.67305388 root 1 Root_unresolved Root_unresolved 346 7.29e-91   NTclustered gi|2787679944|gb|PQ144805.1| 11676 g59953 i0 100 91.6666666666667 187 0 92 0 16 202 1370 1184 HIV-1 isolate Hu_NL_LA_M3171 from USA gag protein (gag) and pol protein (pol) genes, partial cds blastn 18700 346 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25293031 25293031 PRJNA315399_S_NODE_25560_length_260_cov_3.856502_g25359_i0 PRJNA315399 25560 260 3.856502 10.0269052 root 1 Root_unresolved Root_unresolved 473 4.27e-129   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g25359 i0 99.615 100 260 0 100 1 1 260 2958 2700 Moloney murine leukemia virus, complete genome blastn 26000 473 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;