RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA315399" and tax_clade = "sulfur-oxidizing symbionts"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • sulfur-oxidizing symbionts · 2 ✖

bioproject 1

  • PRJNA315399 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16962076 16962076 PRJNA315399_S_NODE_17094_length_294_cov_7.941634_g16893_i0 PRJNA315399 17094 294 7.941634 23.34840396 Bathymodiolus septemdierum thioautotrophic gill symbiont 113267 Bacteria Bacteria 54.7 0.008   NTclustered gi|937342454|dbj|AP013042.1| 1303921 g16893 i0 100 0.0986394557823129 29 0 10 0 117 145 655829 655801 Endosymbiont of Bathymodiolus septemdierum str. Myojin knoll DNA, complete genome blastn 29 54.7 1 Bacteria sulfur-oxidizing symbionts Pseudomonadati Pseudomonadota Gammaproteobacteria       Bathymodiolus septemdierum thioautotrophic gill symbiont
18233716 18233716 PRJNA315399_P_NODE_248495_length_182_cov_2.572414_g248047_i0 PRJNA315399 248495 182 2.572414 4.68179348 Candidatus Vondammii sp. HM_W22 2687299 Bacteria Bacteria 65.8 1.99e-6   NTclustered gi|2666924061|gb|CP099567.1| 2687299 g248047 i0 97.368 73.9230769230769 38 1 21 0 25 62 183126 183163 Candidatus Vondammii sp. HM_W22 chromosome, complete genome blastn 13454 65.8 1 Bacteria sulfur-oxidizing symbionts Pseudomonadati Pseudomonadota Gammaproteobacteria     Candidatus Vondammii Candidatus Vondammii sp. HM_W22

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;