RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA315399" and tax_clade = "ant, tsetse, mealybug, aphid, etc. endosymbionts"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • ant, tsetse, mealybug, aphid, etc. endosymbionts · 3 ✖

bioproject 1

  • PRJNA315399 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4893617 4893617 PRJNA315399_P_NODE_274564_length_180_cov_3.664336_g274116_i0 PRJNA315399 274564 180 3.664336 6.5958048 Candidatus Williamhamiltonella 568987 Bacteria Bacteria 128 2.47e-25   NTclustered gi|1389176145|gb|CP021663.1| 138072 g274116 i0 100 8.37222222222222 69 0 76 0 7 75 1002327 1002259 Candidatus Hamiltonella defensa strain 5D chromosome blastn 1507 128 1 Bacteria ant, tsetse, mealybug, aphid, etc. endosymbionts Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Candidatus Williamhamiltonella Candidatus Williamhamiltonella defendens
7443376 7443376 PRJNA315399_P_NODE_126146_length_193_cov_2.121795_g125698_i0 PRJNA315399 126146 193 2.121795 4.09506435 Candidatus Williamhamiltonella 568987 Bacteria Bacteria 139 1.2399999999999999e-28   NTclustered gi|1389176145|gb|CP021663.1| 138072 g125698 i0 100 6.91709844559585 75 0 65 0 21 95 1453986 1453912 Candidatus Hamiltonella defensa strain 5D chromosome blastn 1335 139 1 Bacteria ant, tsetse, mealybug, aphid, etc. endosymbionts Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Candidatus Williamhamiltonella Candidatus Williamhamiltonella defendens
11861071 11861071 PRJNA315399_P_NODE_298810_length_179_cov_2.598592_g298362_i0 PRJNA315399 298810 179 2.598592 4.65147968 Candidatus Stammera capleta 2608262 Bacteria Bacteria 54.7 0.004   NTclustered gi|1925240908|gb|CP043980.1| 2608262 g298362 i0 96.875 0.17877094972067 32 1 18 0 7 38 9588 9557 MAG: Candidatus Stammera capleta isolate 1 chromosome, complete genome blastn 32 54.7 1 Bacteria ant, tsetse, mealybug, aphid, etc. endosymbionts Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Candidatus Stammera Candidatus Stammera capleta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;