RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA315399" and tax_clade = "Jingmenvirus group"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Jingmenvirus group · 2 ✖

bioproject 1

  • PRJNA315399 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5488160 5488160 PRJNA315399_S_NODE_148265_length_161_cov_4.524194_g148064_i0 PRJNA315399 148265 161 4.524194 7.28395234 Wuhan aphid virus 2 1746068 Viruses Viruses 159 7.66e-35   NTclustered gi|2444492076|gb|OP797725.1| 1746068 g148064 i0 87.591 0.850931677018634 137 17 85 0 25 161 4 140 Wuhan aphid virus 2 isolate 12842-WAV2S4 segment 4 hypothetical protein (VP3) gene, partial cds blastn 137 159 1 Viruses Jingmenvirus group Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae   Wuhan aphid virus 2
22061103 22061103 PRJNA315399_S_NODE_164678_length_157_cov_3.133333_g164477_i0 PRJNA315399 164678 157 3.133333 4.91933281 Wuhan aphid virus 2 1746068 Viruses Viruses 187 3.3999999999999993e-43   NTclustered gi|943496531|gb|KR902726.1| 1746068 g164477 i0 88.462 1.98726114649682 156 16 99 2 2 156 972 818 Wuhan aphid virus 2 strain WHYC-2 segment 2, complete sequence blastn 312 187 1 Viruses Jingmenvirus group Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae   Wuhan aphid virus 2

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;