RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA315314" and tax_phylum = "Porifera"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Porifera · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA315314 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1065354 1065354 PRJNA315314_S_NODE_27301_length_161_cov_2.674242_g26980_i0 PRJNA315314 27301 161 2.674242 4.30552962 Petrosiidae 68562 Porifera other_Eukaryota 150 4.61e-32   NTclustered gi|512765353|gb|KC869591.1| 595385 g26980 i0 85.256 69.5093167701863 156 12 97 5 6 161 3121 3265 Neopetrosia subtriangularis voucher P10x50 28S ribosomal RNA gene, partial sequence blastn 11191 150 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Haplosclerida Petrosiidae Neopetrosia Neopetrosia subtriangularis
5484256 5484256 PRJNA315314_S_NODE_19445_length_187_cov_3.341772_g19124_i0 PRJNA315314 19445 187 3.341772 6.24911364 Haliclona cinerea 178541 Porifera other_Eukaryota 78.7 2.64e-10   NTclustered gi|2842131310|emb|OZ194986.1| 178541 g19124 i0 95.833 34.048128342246 48 2 26 0 59 106 2801 2754 Haliclona cinerea genome assembly, organelle: mitochondrion blastn 6367 78.7 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Haplosclerida Chalinidae Haliclona Haliclona cinerea
14409737 14409737 PRJNA315314_S_NODE_23692_length_171_cov_10.992958_g23371_i0 PRJNA315314 23692 171 10.992958 18.79795818 Crateromorpha meyeri 472232 Porifera other_Eukaryota 62.1 2.38e-5   NTclustered gi|190350204|emb|AM886359.1| 472232 g23371 i0 100 0.192982456140351 33 0 19 0 139 171 651 683 Crateromorpha meyeri partial 28S rRNA gene, isolated from Japan blastn 33 62.1 1 Eukaryota Opisthokonta Metazoa Porifera Hexactinellida Lyssacinosida Rossellidae Crateromorpha Crateromorpha meyeri
15092975 15092975 PRJNA315314_S_NODE_15912_length_205_cov_10.437500_g15591_i0 PRJNA315314 15912 205 10.4375 21.396875 Demospongiae 6042 Porifera other_Eukaryota 58.4 3.85e-4   NTclustered gi|2719038895|ref|XR_010393624.1| 6063 g15591 i0 100 14.8536585365854 31 0 15 0 175 205 3369 3339 PREDICTED: Halichondria panicea large subunit ribosomal RNA (LOC135332780), rRNA blastn 3045 58.4 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Suberitida Halichondriidae Halichondria Halichondria panicea
25291500 25291500 PRJNA315314_S_NODE_4620_length_372_cov_29.116618_g4299_i0 PRJNA315314 4620 372 29.116618 108.31381896 Haplosclerida 6049 Porifera other_Eukaryota 128 5.71e-25   NTclustered gi|1284883228|gb|KY825184.1| 178514 g4299 i0 80.337 8.45698924731183 178 28 47 5 198 372 3474 3301 Amphimedon compressa voucher MNRJ:18771 internal transcribed spacer 2 and 28S ribosomal RNA gene, partial sequence blastn 3146 128 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Haplosclerida Niphatidae Amphimedon Amphimedon compressa

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;