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contig_metadata

13 rows where analysis = "blastn", bioproject = "PRJNA315314" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 13 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA315314 · 13 ✖

analysis 1

  • blastn · 13 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1655538 1655538 PRJNA315314_S_NODE_17902_length_194_cov_4382.678788_g17581_i0 PRJNA315314 17902 194 4382.678788 8502.39684872 Chromadoropsis vivipara 73933 Nematoda Nematoda 172 1.23e-38   NTclustered gi|2063683635|gb|MZ504149.1| 73933 g17581 i0 94.595 34.7577319587629 111 6 57 0 1 111 3702 3592 Chromadoropsis vivipara isolate C-Mv internal transcribed spacer 2 and large subunit ribosomal RNA gene, partial sequence blastn 6743 172 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Chromadorida Chromadoridae Chromadoropsis Chromadoropsis vivipara
1655694 1655694 PRJNA315314_S_NODE_27922_length_159_cov_12.415385_g27601_i0 PRJNA315314 27922 159 12.415385 19.74046215 Campydora demonstrans 211217 Nematoda Nematoda 110 7.7e-20   NTclustered gi|2623950732|gb|OR852751.1| 211217 g27601 i0 79.503 29.4213836477987 161 28 100 5 1 159 4472 4315 Campydora demonstrans isolate OVN-2022 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 4678 110 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Enoplida Campydoridae Campydora Campydora demonstrans
7443271 7443271 PRJNA315314_S_NODE_5266_length_350_cov_3.190031_g4945_i0 PRJNA315314 5266 350 3.190031 11.1651085 Cylicocyclus 53337 Nematoda Nematoda 113 1.5e-20   NTclustered gi|2166980952|gb|MZ888509.1| 71428 g4945 i0 88.421 1.08571428571429 95 10 27 1 80 173 7122 7216 Cylicocyclus auriculatus mitochondrion, complete genome blastn 380 113 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongylidae Cylicocyclus Cylicocyclus auriculatus
9309096 9309096 PRJNA315314_S_NODE_7948_length_286_cov_7.319066_g7627_i0 PRJNA315314 7948 286 7.319066 20.93252876 Campydora demonstrans 211217 Nematoda Nematoda 265 3.12e-66   NTclustered gi|2623950732|gb|OR852751.1| 211217 g7627 i0 83.86 2.95454545454545 285 38 98 8 6 286 6489 6209 Campydora demonstrans isolate OVN-2022 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 845 265 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Enoplida Campydoridae Campydora Campydora demonstrans
10584785 10584785 PRJNA315314_S_NODE_30149_length_154_cov_16.216000_g29828_i0 PRJNA315314 30149 154 16.216 24.97264 Ascaris lumbricoides 6252 Nematoda Nematoda 76.8 7.5e-10   NTclustered gi|347983|gb|L22247.1|NEMSNUB 6252 g29828 i0 86.301 23.6688311688312 73 6 47 4 1 72 452 383 Ascaris lumbricoides snRNA U2-1 gene, snRNA U2-2 pseudogenes, and snRNA U2-1 gene, complete sequence blastn 3645 76.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ascarididae Ascaris Ascaris lumbricoides
13134749 13134749 PRJNA315314_S_NODE_6051_length_328_cov_5.518395_g5730_i0 PRJNA315314 6051 328 5.518395 18.1003356 Rhigonema thysanophora 435730 Nematoda Nematoda 401 2.6599999999999993e-107   NTclustered gi|1255552292|gb|MG195996.1| 435730 g5730 i0 88.822 100.835365853659 331 31 100 6 1 328 2002 1675 Rhigonema thysanophora isolate X-3981 large subunit ribosomal RNA gene, partial sequence blastn 33074 401 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhigonematidae Rhigonema Rhigonema thysanophora
13818719 13818719 PRJNA315314_S_NODE_24311_length_169_cov_15.407143_g23990_i0 PRJNA315314 24311 169 15.407143 26.03807167 Chromadorea 119089 Nematoda Nematoda 307 2.73e-79   NTclustered gi|283484471|gb|GQ892827.1| 70222 g23990 i0 99.408 100 169 1 100 0 1 169 1096 928 Plectus aquatilis 18S ribosomal RNA gene, partial sequence blastn 16900 307 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Plectida Plectidae Plectus Plectus aquatilis
14409914 14409914 PRJNA315314_S_NODE_5012_length_358_cov_31.404255_g4691_i0 PRJNA315314 5012 358 31.404255 112.4272329 Nematoda environmental sample 554024 Nematoda Nematoda 488 2.1799999999999998e-133   NTclustered gi|460423923|gb|KC306538.1| 554024 g4691 i0 91.365 94.9050279329609 359 28 100 3 1 358 384 28 Nematoda environmental sample clone BT_Euk_C8 18S ribosomal RNA gene, partial sequence blastn 33976 488 1 Eukaryota Opisthokonta Metazoa Nematoda         Nematoda environmental sample
15093131 15093131 PRJNA315314_S_NODE_9572_length_261_cov_3128.896552_g9251_i0 PRJNA315314 9572 261 3128.896552 8166.42000072 Metazoa 33208 Nematoda Nematoda 405 1.59e-108   NTclustered gi|2646098909|gb|PP099678.1| 49354 g9251 i0 99.55 85.1072796934866 222 1 85 0 35 256 588 809 Plectus sp. isolate Nem.501 small subunit ribosomal RNA gene, partial sequence blastn 22213 405 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Plectida Plectidae Plectus Plectus sp.
15683600 15683600 PRJNA315314_S_NODE_31833_length_151_cov_2.934426_g31512_i0 PRJNA315314 31833 151 2.934426 4.43098326 Mesorhabditis sp. 'Bursilla' PS1179 466951 Nematoda Nematoda 156 9.13e-34   NTclustered gi|157787501|gb|EF990722.1| 466951 g31512 i0 87.681 94.364238410596 138 12 91 2 4 141 1360 1228 Bursilla sp. PS1179 28S large subunit ribosomal RNA gene, partial sequence blastn 14249 156 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Mesorhabditis Mesorhabditis sp. 'Bursilla' PS1179
16958035 16958035 PRJNA315314_S_NODE_10814_length_246_cov_5.760369_g10493_i0 PRJNA315314 10814 246 5.760369 14.17050774 Caenorhabditis remanei 31234 Nematoda Nematoda 82.4 2.83e-11   NTclustered gi|2445393885|ref|XM_053735838.1| 31234 g10493 i0 97.872 18.3780487804878 47 1 19 0 200 246 118 164 Caenorhabditis remanei uncharacterized protein (GCK72_024337), partial mRNA blastn 4521 82.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
22742060 22742060 PRJNA315314_S_NODE_12918_length_226_cov_12.573604_g12597_i0 PRJNA315314 12918 226 12.573604 28.41634504 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 110 1.18e-19   NTclustered gi|158821918|gb|EU195982.1| 54126 g12597 i0 88.298 59.6946902654867 94 7 41 4 4 95 1960 1869 Pristionchus pacificus strain 312 28S ribosomal RNA gene, partial sequence blastn 13491 111 0.990990990990991 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pacificus
24017243 24017243 PRJNA315314_S_NODE_8619_length_275_cov_27.040650_g8298_i0 PRJNA315314 8619 275 27.04065 74.3617875 Rhabditida 6236 Nematoda Nematoda 231 3.0199999999999996e-56   NTclustered gi|159684|gb|M74585.1|NEMRGB 6252 g8298 i0 81.949 27.7272727272727 277 46 100 4 1 275 488 214 Ascaris lumbricoides 18S rRNA gene, 5' end, and 26S rRNA gene, 3' end blastn 7625 233 0.991416309012876 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ascarididae Ascaris Ascaris lumbricoides

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;