RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA315314" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA315314 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5484247 5484247 PRJNA315314_S_NODE_1865_length_569_cov_7.668519_g1593_i0 PRJNA315314 1865 569 7.668519 43.63387311 Polymyxa betae 41456 SAR_Eukaryotes SAR_Eukaryotes 202 5.27e-47   NTclustered gi|2127897050|ref|NC_059071.1| 41456 g1593 i0 77.568 52.871704745167 370 60 62 21 4 357 20050 19688 Polymyxa betae isolate A26-41 genome assembly, organelle: mitochondrion blastn 30084 202 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Polymyxa Polymyxa betae
6758487 6758487 PRJNA315314_S_NODE_2186_length_533_cov_4.980159_g1895_i0 PRJNA315314 2186 533 4.980159 26.54424747 Arachnula sp. CL12 862247 SAR_Eukaryotes SAR_Eukaryotes 390 9.760000000000001e-104   NTclustered gi|302026178|gb|GQ377695.1| 862247 g1895 i0 80.952 79.3452157598499 504 86 94 8 28 526 1118 620 Arachnula sp. CL12 elongation factor 1 alpha mRNA, partial cds blastn 42291 390 1 Eukaryota Sar   Endomyxa   Vampyrellida Leptophryidae Arachnula Arachnula sp. CL12

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;