RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA315314" and tax_phylum = "Ctenophora"

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tax_superkingdom 1

tax_phylum 1

  • Ctenophora · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA315314 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1065316 1065316 PRJNA315314_S_NODE_21581_length_178_cov_23.281879_g21260_i0 PRJNA315314 21581 178 23.281879 41.44174462 Tentaculata 140493 Ctenophora other_Eukaryota 152 1.4399999999999999e-32   NTclustered gi|2742502546|gb|PP905548.1| 12997 g21260 i0 88.189 70.4269662921348 127 15 71 0 52 178 5708 5834 Cestum veneris isolate SRR3048955 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 12536 152 1 Eukaryota Opisthokonta Metazoa Ctenophora Tentaculata Cestida Cestidae Cestum Cestum veneris
2340628 2340628 PRJNA315314_S_NODE_5182_length_352_cov_2284.383901_g4861_i0 PRJNA315314 5182 352 2284.383901 8041.03133152 Ctenophora 10197 Ctenophora other_Eukaryota 128 5.3699999999999995e-25   NTclustered gi|2742502517|gb|PP905519.1| 10201 g4861 i0 90.722 21.6221590909091 97 8 28 1 26 122 6163 6068 Beroe ovata isolate ERR2206327 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 7611 128 1 Eukaryota Opisthokonta Metazoa Ctenophora Nuda Beroida Beroidae Beroe Beroe ovata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;