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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA315314" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA315314 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1065311 1065311 PRJNA315314_S_NODE_20561_length_182_cov_9.954248_g20240_i0 PRJNA315314 20561 182 9.954248 18.11673136 Eukaryota 2759 Fungi Fungi 78.7 2.55e-10   NTclustered gi|387155810|emb|HE806183.1| 282511 g20240 i0 82.418 4.85164835164835 91 14 50 1 3 93 1456 1368 Uncultured Chytridiales partial 26S rRNA gene, clone Gcomple6 blastn 883 78.7 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales     uncultured Chytridiales
4893122 4893122 PRJNA315314_S_NODE_19344_length_187_cov_4828.810127_g19023_i0 PRJNA315314 19344 187 4828.810127 9029.87493749 Chytridiomycetes 451435 Fungi Fungi 215 1.93e-51   NTclustered gi|82398629|gb|DQ273835.1| 355338 g19023 i0 92.157 82.4705882352941 153 11 82 1 1 153 1389 1238 Rhizophydium sp. JEL316 isolate AFTOL-ID 1535 28S ribosomal RNA gene, partial sequence blastn 15422 217 0.990783410138249 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales Rhizophydiaceae Rhizophydium Rhizophydium sp. JEL316
11268582 11268582 PRJNA315314_S_NODE_4469_length_378_cov_21.395415_g4148_i0 PRJNA315314 4469 378 21.395415 80.8746687 Eukaryota 2759 Fungi Fungi 121 9.73e-23   NTclustered gi|311408948|gb|HQ191369.1| 175247 g4148 i0 85.841 17.1005291005291 113 16 30 0 1 113 938 826 Uncultured Chytridiomycota clone PA2009C3 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 6464 121 1 Eukaryota Opisthokonta Fungi Chytridiomycota         uncultured Chytridiomycota
14409740 14409740 PRJNA315314_S_NODE_23732_length_171_cov_5.056338_g23411_i0 PRJNA315314 23732 171 5.056338 8.64633798 Orpinomyces sp. OUS1 301046 Fungi Fungi 135 1.3800000000000002e-27   NTclustered gi|55859492|emb|AJ864475.1| 301046 g23411 i0 86.29 4.38011695906433 124 17 73 0 1 124 4706 4583 Orpinomyces sp. OUS1 partial 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2 and partial 28S rRNA, clone V5-1 blastn 749 135 1 Eukaryota Opisthokonta Fungi Chytridiomycota Neocallimastigomycetes Neocallimastigales Neocallimastigaceae Orpinomyces Orpinomyces sp. OUS1
16958404 16958404 PRJNA315314_S_NODE_4734_length_368_cov_80.672566_g4413_i0 PRJNA315314 4734 368 80.672566 296.87504288 Gromochytrium mamkaevae 1486924 Fungi Fungi 134 1.21e-26   NTclustered gi|612507318|gb|KF586842.1| 1486924 g4413 i0 89.899 18.8396739130435 99 10 27 0 270 368 6131 6229 Gromochytrium mamkaevae strain CALU x-51 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 6933 134 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Gromochytriales Gromochytriaceae Gromochytrium Gromochytrium mamkaevae
20782603 20782603 PRJNA315314_S_NODE_7817_length_288_cov_75.320463_g7496_i0 PRJNA315314 7817 288 75.320463 216.92293344 Gromochytrium mamkaevae 1486924 Fungi Fungi 134 9.25e-27   NTclustered gi|612507318|gb|KF586842.1| 1486924 g7496 i0 89.899 11.9444444444444 99 10 34 0 190 288 6131 6229 Gromochytrium mamkaevae strain CALU x-51 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 3440 134 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Gromochytriales Gromochytriaceae Gromochytrium Gromochytrium mamkaevae
22057510 22057510 PRJNA315314_S_NODE_5438_length_344_cov_30.492063_g5117_i0 PRJNA315314 5438 344 30.492063 104.89269672 Gaertneriomyces semiglobifer 109897 Fungi Fungi 215 3.92e-51   NTclustered gi|82398216|gb|DQ273778.1| 109897 g5117 i0 99.16 57.1308139534884 119 1 58 0 1 119 2283 2165 Gaertneriomyces semiglobiferus isolate AFTOL-ID 34 28S ribosomal RNA gene, partial sequence blastn 19653 215 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Gaertneriomyces Gaertneriomyces semiglobifer
25291408 25291408 PRJNA315314_S_NODE_19600_length_186_cov_10.885350_g19279_i0 PRJNA315314 19600 186 10.88535 20.246751 Nowakowskiella 109880 Fungi Fungi 187 4.18e-43   NTclustered gi|1866582654|gb|MT730829.1| 2011712 g19279 i0 84.946 100.543010752688 186 27 100 1 1 186 3678 3862 Cladochytriales sp. isolate JEL0818 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 18701 187 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Cladochytriales     Cladochytriales sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;