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contig_metadata

29 rows where analysis = "blastn", bioproject = "PRJNA315314" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 29 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA315314 · 29 ✖

analysis 1

  • blastn · 29 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
380837 380837 PRJNA315314_S_NODE_2181_length_533_cov_20.912698_g1890_i0 PRJNA315314 2181 533 20.912698 111.46468034 Xenopus tropicalis 8364 Chordata Chordata 713 0   NTclustered gi|51895800|gb|BC080974.1| 8364 g1890 i0 90.977 99.1332082551595 532 44 99 3 1 530 709 1238 Xenopus tropicalis hypothetical LOC493206, mRNA (cDNA clone IMAGE:6984500), partial cds blastn 52838 713 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus tropicalis
381027 381027 PRJNA315314_S_NODE_4661_length_371_cov_4.046784_g4340_i0 PRJNA315314 4661 371 4.046784 15.01356864 Polypterus senegalus 55291 Chordata Chordata 267 1.16e-66   NTclustered gi|1993892376|ref|XM_039743353.1| 55291 g4340 i0 80.052 12.5067385444744 386 55 99 19 3 371 559 939 PREDICTED: Polypterus senegalus E3 SUMO-protein ligase ZBED1-like (LOC120522331), mRNA blastn 4640 267 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
1065365 1065365 PRJNA315314_S_NODE_29361_length_156_cov_3.023622_g29040_i0 PRJNA315314 29361 156 3.023622 4.71685032 Squamata 8509 Chordata Chordata 128 2.08e-25   NTclustered gi|2593488281|ref|XM_060232621.1| 13085 g29040 i0 82.639 28.6602564102564 144 25 92 0 10 153 215 358 PREDICTED: Heteronotia binoei eukaryotic translation elongation factor 2 (EEF2), mRNA blastn 4471 128 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Gekkonidae Heteronotia Heteronotia binoei
1655506 1655506 PRJNA315314_S_NODE_1602_length_611_cov_19.565292_g1342_i0 PRJNA315314 1602 611 19.565292 119.54393412 Xenopus tropicalis 8364 Chordata Chordata 1014 0   NTclustered gi|51895800|gb|BC080974.1| 8364 g1342 i0 96.716 91.1080196399345 609 20 99 0 1 609 105 713 Xenopus tropicalis hypothetical LOC493206, mRNA (cDNA clone IMAGE:6984500), partial cds blastn 55667 1014 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus tropicalis
1655668 1655668 PRJNA315314_S_NODE_26102_length_164_cov_3.548148_g25781_i0 PRJNA315314 26102 164 3.548148 5.81896272 Pyrrhula murina 928672 Chordata Chordata 54.7 0.004   NTclustered gi|2920008267|emb|OZ239000.1| 928672 g25781 i0 100 0.176829268292683 29 0 18 0 71 99 23013926 23013954 Pyrrhula murina genome assembly, chromosome: 6 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Fringillidae Pyrrhula Pyrrhula murina
1655679 1655679 PRJNA315314_S_NODE_26702_length_163_cov_1.343284_g26381_i0 PRJNA315314 26702 163 1.343284 2.18955292 Pyrrhula murina 928672 Chordata Chordata 58.4 2.92e-4   NTclustered gi|2920008271|emb|OZ239004.1| 928672 g26381 i0 97.059 0.208588957055215 34 1 21 0 83 116 23909193 23909226 Pyrrhula murina genome assembly, chromosome: W blastn 34 58.4 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Fringillidae Pyrrhula Pyrrhula murina
4207925 4207925 PRJNA315314_S_NODE_16404_length_202_cov_9.895954_g16083_i0 PRJNA315314 16404 202 9.895954 19.98982708 Tupaia chinensis 246437 Chordata Chordata 54.7 0.005   NTclustered gi|1561585319|ref|XM_014589441.2| 246437 g16083 i0 100 0.143564356435644 29 0 14 0 106 134 1437 1465 PREDICTED: Tupaia chinensis ring finger and WD repeat domain 3 (RFWD3), mRNA blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Scandentia Tupaiidae Tupaia Tupaia chinensis
4207970 4207970 PRJNA315314_S_NODE_18964_length_189_cov_7.850000_g18643_i0 PRJNA315314 18964 189 7.85 14.8365 Protopterus annectens 7888 Chordata Chordata 60.2 9.69e-5   NTclustered gi|2118955173|ref|XR_006364945.1| 7888 g18643 i0 97.143 0.185185185185185 35 1 19 0 155 189 3154 3188 PREDICTED: Protopterus annectens 28S ribosomal RNA (LOC122802495), rRNA blastn 35 60.2 1 Eukaryota Opisthokonta Metazoa Chordata   Ceratodontiformes Protopteridae Protopterus Protopterus annectens
4893190 4893190 PRJNA315314_S_NODE_29984_length_155_cov_1.825397_g29663_i0 PRJNA315314 29984 155 1.825397 2.82936535 Lampetra 13103 Chordata Chordata 52.8 0.013   NTclustered gi|2805737127|emb|OZ078444.1| 7748 g29663 i0 100 0.541935483870968 28 0 18 0 92 119 7076538 7076565 Lampetra fluviatilis genome assembly, chromosome: 41 blastn 84 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra fluviatilis
6758464 6758464 PRJNA315314_S_NODE_2006_length_551_cov_19.408046_g1342_i1 PRJNA315314 2006 551 19.408046 106.93833346 Xenopus tropicalis 8364 Chordata Chordata 887 0   NTclustered gi|51895800|gb|BC080974.1| 8364 g1342 i1 95.811 95.7459165154265 549 23 99 0 1 549 165 713 Xenopus tropicalis hypothetical LOC493206, mRNA (cDNA clone IMAGE:6984500), partial cds blastn 52756 887 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus tropicalis
7443189 7443189 PRJNA315314_S_NODE_20306_length_183_cov_11.928571_g19985_i0 PRJNA315314 20306 183 11.928571 21.82928493 Metazoa 33208 Chordata Chordata 54.7 0.004   NTclustered gi|2703827529|ref|XR_010187631.1| 495146 g19985 i0 100 3.38251366120219 29 0 16 0 1 29 1938 1966 PREDICTED: Pseudophryne corroboree 28S ribosomal RNA (LOC134959628), rRNA blastn 619 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Myobatrachidae Pseudophryne Pseudophryne corroboree
8033978 8033978 PRJNA315314_S_NODE_15527_length_208_cov_2.027933_g15206_i0 PRJNA315314 15527 208 2.027933 4.21810064 Lampetra planeri 7750 Chordata Chordata 58.4 3.92e-4   NTclustered gi|2805745495|emb|OZ078522.1| 7750 g15206 i0 90.698 1.8125 43 4 21 0 39 81 3272563 3272521 Lampetra planeri genome assembly, chromosome: 37 blastn 377 58.4 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra planeri
13818787 13818787 PRJNA315314_S_NODE_5891_length_332_cov_4.722772_g5570_i0 PRJNA315314 5891 332 4.722772 15.67960304 Mammalia 40674 Chordata Chordata 56.5 0.002   NTclustered gi|1845665753|ref|XM_019807791.2| 9646 g5570 i0 94.444 1.2078313253012 36 2 11 0 182 217 609 574 PREDICTED: Ailuropoda melanoleuca nephrocystin 1 (NPHP1), transcript variant X2, mRNA blastn 401 56.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Ursidae Ailuropoda Ailuropoda melanoleuca
15683516 15683516 PRJNA315314_S_NODE_24913_length_168_cov_1.625899_g24592_i0 PRJNA315314 24913 168 1.625899 2.73151032 Sorex araneus 42254 Chordata Chordata 135 1.3600000000000002e-27   NTclustered gi|2487349974|ref|XM_004613761.2| 42254 g24592 i0 81.437 21.5595238095238 167 29 99 2 1 166 483 318 PREDICTED: Sorex araneus COPI coat complex subunit alpha (COPA), transcript variant X1, mRNA blastn 3622 135 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Eulipotyphla Soricidae Sorex Sorex araneus
15683737 15683737 PRJNA315314_S_NODE_9253_length_266_cov_4.063291_g8932_i0 PRJNA315314 9253 266 4.063291 10.80835406 Mus musculus 10090 Chordata Chordata 226 1.3499999999999998e-54   NTclustered gi|2904935057|gb|PQ737980.1| 10090 g8932 i0 86.047 0.808270676691729 215 24 79 6 5 215 14 226 Mus musculus lncRNA390 lncRNA, complete sequence blastn 215 226 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
16958410 16958410 PRJNA315314_S_NODE_5014_length_358_cov_15.680851_g4693_i0 PRJNA315314 5014 358 15.680851 56.13744658 Xenopus tropicalis 8364 Chordata Chordata 259 1.86e-64   NTclustered gi|51895800|gb|BC080974.1| 8364 g4693 i0 95.652 42.3631284916201 161 7 45 0 1 161 1129 1289 Xenopus tropicalis hypothetical LOC493206, mRNA (cDNA clone IMAGE:6984500), partial cds blastn 15166 259 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus tropicalis
18232390 18232390 PRJNA315314_S_NODE_16035_length_205_cov_1.676136_g15714_i0 PRJNA315314 16035 205 1.676136 3.4360788 Lampetra planeri 7750 Chordata Chordata 52.8 0.018   NTclustered gi|2805742079|emb|OZ078493.1| 7750 g15714 i0 100 0.273170731707317 28 0 14 0 88 115 12980844 12980871 Lampetra planeri genome assembly, chromosome: 8 blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra planeri
19506841 19506841 PRJNA315314_S_NODE_24996_length_167_cov_12.804348_g24675_i0 PRJNA315314 24996 167 12.804348 21.38326116 Gracilinanus agilis 191870 Chordata Chordata 58.4 3.01e-4   NTclustered gi|2119491804|ref|XR_006505698.1| 191870 g24675 i0 94.737 0.395209580838323 38 1 23 1 1 38 36 72 PREDICTED: Gracilinanus agilis U2 spliceosomal RNA (LOC123238541), ncRNA blastn 66 58.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Didelphimorphia Didelphidae Gracilinanus Gracilinanus agilis
19507028 19507028 PRJNA315314_S_NODE_6336_length_320_cov_16.017182_g6015_i0 PRJNA315314 6336 320 16.017182 51.2549824 Xenopus tropicalis 8364 Chordata Chordata 353 7.35e-93   NTclustered gi|51895800|gb|BC080974.1| 8364 g6015 i0 97.129 51.675 209 6 65 0 1 209 1129 1337 Xenopus tropicalis hypothetical LOC493206, mRNA (cDNA clone IMAGE:6984500), partial cds blastn 16536 353 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus tropicalis
20191336 20191336 PRJNA315314_S_NODE_15116_length_210_cov_5.303867_g14795_i0 PRJNA315314 15116 210 5.303867 11.1381207 root 1 Root_unresolved Root_unresolved 283 6e-72   NTclustered gi|38512082|gb|BC061437.1| 8364 g14795 i0 90.952 8.50952380952381 210 19 100 0 1 210 444 235 Xenopus tropicalis 40S ribosomal protein S6, mRNA (cDNA clone MGC:76319 IMAGE:5380258), complete cds blastn 1787 283 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus tropicalis
20782246 20782246 PRJNA315314_S_NODE_16977_length_199_cov_9.694118_g16656_i0 PRJNA315314 16977 199 9.694118 19.29129482 Xenopus tropicalis 8364 Chordata Chordata 268 1.5799999999999998e-67   NTclustered gi|51895800|gb|BC080974.1| 8364 g16656 i0 90.955 100.492462311558 199 18 100 0 1 199 675 873 Xenopus tropicalis hypothetical LOC493206, mRNA (cDNA clone IMAGE:6984500), partial cds blastn 19998 268 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus tropicalis
20782330 20782330 PRJNA315314_S_NODE_2117_length_539_cov_23.639216_g1830_i0 PRJNA315314 2117 539 23.639216 127.41537424 Xenopus tropicalis 8364 Chordata Chordata 769 0   NTclustered gi|51895800|gb|BC080974.1| 8364 g1830 i0 92.421 99.1855287569573 541 37 100 3 1 539 709 1247 Xenopus tropicalis hypothetical LOC493206, mRNA (cDNA clone IMAGE:6984500), partial cds blastn 53461 769 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus tropicalis
20782378 20782378 PRJNA315314_S_NODE_24337_length_169_cov_5.664286_g24016_i0 PRJNA315314 24337 169 5.664286 9.57264334 Polypterus senegalus 55291 Chordata Chordata 200 4.76e-47   NTclustered gi|1993937637|ref|XM_039741126.1| 55291 g24016 i0 89.024 11.0828402366864 164 15 96 3 8 169 1173 1335 PREDICTED: Polypterus senegalus E3 SUMO-protein ligase ZBED1-like (LOC120518358), transcript variant X2, mRNA blastn 1873 200 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
21467057 21467057 PRJNA315314_S_NODE_1937_length_559_cov_17.745283_g1660_i0 PRJNA315314 1937 559 17.745283 99.19613197 Metazoa 33208 Chordata Chordata 60.2 3.29e-4   NTclustered gi|37654293|gb|AY383694.1| 10116 g1660 i0 100 0.597495527728086 32 0 6 0 526 557 924 955 Rattus norvegicus LRRGT00039 mRNA, complete cds blastn 334 60.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Rattus Rattus norvegicus
22057436 22057436 PRJNA315314_S_NODE_31718_length_151_cov_6.721311_g31397_i0 PRJNA315314 31718 151 6.721311 10.14917961 Equus caballus 9796 Chordata Chordata 161 1.96e-35   NTclustered gi|2867935280|ref|XR_011435605.1| 9796 g31397 i0 92.857 75.0264900662252 112 6 74 2 1 112 913 804 PREDICTED: Equus caballus 28S ribosomal RNA (LOC138922519), rRNA blastn 11329 161 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Perissodactyla Equidae Equus Equus caballus
23332976 23332976 PRJNA315314_S_NODE_32099_length_151_cov_1.303279_g31778_i0 PRJNA315314 32099 151 1.303279 1.96795129 Muntiacus reevesi 9886 Chordata Chordata 60.2 7.36e-5   NTclustered gi|2746072558|ref|XM_065943203.1| 9886 g31778 i0 92.683 0.271523178807947 41 3 27 0 3 43 184 224 PREDICTED: Muntiacus reevesi large ribosomal subunit protein eL39-like (LOC136173523), mRNA blastn 41 60.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Muntiacus Muntiacus reevesi
23333048 23333048 PRJNA315314_S_NODE_6099_length_327_cov_3.852349_g5778_i0 PRJNA315314 6099 327 3.852349 12.59718123 Bos indicus x Bos taurus 30522 Chordata Chordata 86.1 3.03e-12   NTclustered gi|1542922085|ref|XR_003508138.1| 30522 g5778 i0 80.357 0.63302752293578 112 22 34 0 11 122 1292 1403 PREDICTED: Bos indicus x Bos taurus elongation factor 1-alpha 1 pseudogene (LOC113881742), misc_RNA blastn 207 86.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos indicus x Bos taurus
24607073 24607073 PRJNA315314_S_NODE_32280_length_150_cov_3.619835_g31959_i0 PRJNA315314 32280 150 3.619835 5.4297525 Erpetoichthys calabaricus 27687 Chordata Chordata 193 6.9e-45   NTclustered gi|2327563545|ref|XM_051935314.1| 27687 g31959 i0 91.971 16.9866666666667 137 11 91 0 2 138 846 982 PREDICTED: Erpetoichthys calabaricus E3 SUMO-protein ligase ZBED1-like (LOC127529930), mRNA blastn 2548 193 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus
25291453 25291453 PRJNA315314_S_NODE_27240_length_161_cov_3.598485_g26919_i0 PRJNA315314 27240 161 3.598485 5.79356085 root 1 Root_unresolved Root_unresolved 58.4 2.87e-4   NTclustered gi|1785384304|ref|XM_012968152.3| 8364 g26919 i0 100 1.73291925465839 31 0 19 0 124 154 1162 1192 PREDICTED: Xenopus tropicalis SET nuclear proto-oncogene (set), transcript variant X2, mRNA blastn 279 58.4 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus tropicalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;