RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA315314" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA315314 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2931694 2931694 PRJNA315314_S_NODE_7183_length_301_cov_2.801471_g6862_i0 PRJNA315314 7183 301 2.801471 8.43242771 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 331 3.2100000000000002e-86   NTclustered gi|657012367|gb|KF302531.1| 2850 g6862 i0 86.667 26.890365448505 300 38 99 2 3 301 357 59 Phaeodactylum tricornutum clone C443 40S ribosomal protein mRNA, partial cds blastn 8094 331 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
8034143 8034143 PRJNA315314_S_NODE_25567_length_166_cov_1.540146_g25246_i0 PRJNA315314 25567 166 1.540146 2.55664236 Nitzschia ovalis 908985 SAR_Eukaryotes SAR_Eukaryotes 91.6 2.95e-14   NTclustered gi|2202538962|gb|OM891868.1| 908985 g25246 i0 77.193 13.5963855421687 171 29 100 10 1 166 4049 3884 Nitzschia ovalis small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 2257 91.6 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Nitzschia Nitzschia ovalis
12543788 12543788 PRJNA315314_S_NODE_22150_length_176_cov_7.816327_g21829_i0 PRJNA315314 22150 176 7.816327 13.75673552 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 122 1.1199999999999999e-23   NTclustered gi|2839792213|gb|PQ512811.1| 37318 g21829 i0 80.114 101.0625 176 26 100 5 1 176 5037 5203 Pseudo-nitzschia pungens isolate CNS00141 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 17787 122 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Pseudo-nitzschia Pseudo-nitzschia pungens
19506711 19506711 PRJNA315314_S_NODE_17216_length_198_cov_3.437870_g16895_i0 PRJNA315314 17216 198 3.43787 6.8069826 Attheya longicornis 451786 SAR_Eukaryotes SAR_Eukaryotes 113 7.76e-21   NTclustered gi|2046217437|gb|MW729336.1| 451786 g16895 i0 79.874 6.90909090909091 159 28 79 4 43 198 38496 38339 Attheya longicornis mitochondrion, complete genome blastn 1368 113 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Chaetocerotales Attheyaceae Attheya Attheya longicornis
20782335 20782335 PRJNA315314_S_NODE_21437_length_179_cov_2.700000_g21116_i0 PRJNA315314 21437 179 2.7 4.833 Berkeleya fennica 1577906 SAR_Eukaryotes SAR_Eukaryotes 185 1.43e-42   NTclustered gi|746001744|ref|NC_026126.1| 1577906 g21116 i0 85.393 78.1061452513967 178 26 99 0 2 179 2978 3155 Berkeleya fennica mitochondrion, complete genome blastn 13981 185 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Berkeleyaceae Berkeleya Berkeleya fennica
22057403 22057403 PRJNA315314_S_NODE_2858_length_467_cov_9.522831_g2543_i0 PRJNA315314 2858 467 9.522831 44.47162077 Minutocellus polymorphus 265543 SAR_Eukaryotes SAR_Eukaryotes 132 5.67e-26   NTclustered gi|2020303798|gb|MW417227.1| 265543 g2543 i0 78.404 2.5524625267666 213 38 45 7 151 359 8483 8691 Minutocellus polymorphus isolate CNS00217 mitochondrion, complete genome blastn 1192 132 1 Eukaryota Sar   Bacillariophyta Mediophyceae Cymatosirales Cymatosiraceae Minutocellus Minutocellus polymorphus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;