contig_metadata
20 rows where analysis = "blastn", bioproject = "PRJNA315314" and tax_phylum = "Acidobacteriota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 4893089 | 4893089 | PRJNA315314_S_NODE_14784_length_212_cov_53.710383_g14463_i0 | PRJNA315314 | 14784 | 212 | 53.710383 | 113.86601196 | Bacteria | 2 | Bacteria | Bacteria | 248 | 2.2099999999999997e-61 | NTclustered | gi|1015624362|gb|AH012920.2| | 171953 | g14463 | i0 | 88.35 | 142.5 | 206 | 24 | 97 | 0 | 7 | 212 | 29533 | 29328 | Uncultured Acidobacteria bacterium clone 46h5 hypothetical protein, putative O-linked GlcNAc transferase, putative two-component response regulator, hypothetical protein, putative penicillin-resistance DD-carboxypeptidase, putative glycosyl transferase, hypothetical protein, conserved hypothetical protein, hypothetical protein, putative MaoC family dehydratase, putative D-3-phosphoglycerate dehydrogenase, putative magnesium and cobalt transport protein, putative phosphatidyl-glycerophosphatase, putative 2-methylthioadenine synthetase, hypothetical protein, putative glutamine cyclotransferase, and hypothetical protein genes, complete cds; 5S ribosomal RNA, 23S ribosomal RNA, tRNA-Ala, tRNA-Met, tRNA-Ile, and 16S ribosomal RNA genes, complete sequence; and hypothetical protein genes, complete cds | blastn | 30210 | 248 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | uncultured Acidobacteriota bacterium | ||||||
| 5484169 | 5484169 | PRJNA315314_S_NODE_14085_length_217_cov_11.569149_g13764_i0 | PRJNA315314 | 14085 | 217 | 11.569149 | 25.10505333 | Bryobacteraceae bacterium | 2212468 | Bacteria | Bacteria | 257 | 3.78e-64 | NTclustered | gi|2621707050|emb|OY764903.1| | 2212468 | g13764 | i0 | 88.318 | 224.857142857143 | 214 | 25 | 99 | 0 | 1 | 214 | 3559284 | 3559071 | MAG: Bryobacteraceae bacterium isolate d7944118-f527-4ba8-a886-cdd3ae4bc3f8 genome assembly, chromosome: 1 | blastn | 48794 | 257 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | Terriglobia | Bryobacterales | Bryobacteraceae | Bryobacteraceae bacterium | |||
| 5484241 | 5484241 | PRJNA315314_S_NODE_1825_length_574_cov_1582.480734_g1555_i0 | PRJNA315314 | 1825 | 574 | 1582.480734 | 9083.43941316 | Geothrix sp. 21YS21S-4 | 3068889 | Bacteria | Bacteria | 512 | 2.1599999999999997e-140 | NTclustered | gi|2565867660|gb|CP132719.1| | 3068889 | g1555 | i0 | 91.029 | 126.923344947735 | 379 | 34 | 66 | 0 | 196 | 574 | 150537 | 150915 | Geothrix sp. 21YS21S-4 chromosome, complete genome | blastn | 72854 | 512 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | Holophagae | Holophagales | Holophagaceae | Geothrix | Geothrix sp. 21YS21S-4 | ||
| 6168039 | 6168039 | PRJNA315314_S_NODE_10705_length_247_cov_138.633028_g10384_i0 | PRJNA315314 | 10705 | 247 | 138.633028 | 342.42357916 | Geothrix | 44675 | Bacteria | Bacteria | 326 | 1.19e-84 | NTclustered | gi|84452201|emb|AM180899.1| | 171953 | g10384 | i0 | 90.688 | 591.882591093117 | 247 | 20 | 99 | 3 | 1 | 245 | 1717 | 1472 | Uncultured Acidobacteria bacterium partial 23S rRNA gene, clone LS_LKC11_kan2 | blastn | 146195 | 326 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | uncultured Acidobacteriota bacterium | ||||||
| 7443152 | 7443152 | PRJNA315314_S_NODE_14646_length_213_cov_57.543478_g14325_i0 | PRJNA315314 | 14646 | 213 | 57.543478 | 122.56760814 | Bacteria | 2 | Bacteria | Bacteria | 337 | 4.62e-88 | NTclustered | gi|2874253692|emb|OY969418.1| | 171953 | g14325 | i0 | 96.117 | 128.215962441315 | 206 | 8 | 97 | 0 | 8 | 213 | 4231896 | 4231691 | MAG: uncultured Acidobacteriota bacterium isolate MFD09212.bin.c.1 genome assembly, chromosome: 1 | blastn | 27310 | 339 | 0.994100294985251 | Bacteria | Pseudomonadati | Acidobacteriota | uncultured Acidobacteriota bacterium | ||||||
| 7443217 | 7443217 | PRJNA315314_S_NODE_25286_length_166_cov_183.029197_g24965_i0 | PRJNA315314 | 25286 | 166 | 183.029197 | 303.82846702 | Bacteria | 2 | Bacteria | Bacteria | 291 | 2.7099999999999998e-74 | NTclustered | gi|2874254027|emb|OY970352.1| | 171953 | g24965 | i0 | 98.193 | 249.849397590361 | 166 | 3 | 100 | 0 | 1 | 166 | 2366070 | 2366235 | MAG: uncultured Acidobacteriota bacterium isolate MFD01916.bin.c.5 genome assembly, chromosome: 1 | blastn | 41475 | 291 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | uncultured Acidobacteriota bacterium | ||||||
| 8034291 | 8034291 | PRJNA315314_S_NODE_5967_length_330_cov_7.239203_g5646_i0 | PRJNA315314 | 5967 | 330 | 7.239203 | 23.8893699 | uncultured Acidobacteriota bacterium | 171953 | Bacteria | Bacteria | 324 | 5.9599999999999995e-84 | NTclustered | gi|2874253692|emb|OY969418.1| | 171953 | g5646 | i0 | 85.625 | 137.2 | 320 | 33 | 95 | 13 | 1 | 312 | 4233633 | 4233947 | MAG: uncultured Acidobacteriota bacterium isolate MFD09212.bin.c.1 genome assembly, chromosome: 1 | blastn | 45276 | 324 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | uncultured Acidobacteriota bacterium | ||||||
| 9309059 | 9309059 | PRJNA315314_S_NODE_6148_length_325_cov_296.341216_g5827_i0 | PRJNA315314 | 6148 | 325 | 296.341216 | 963.108952 | Geothrix sp. 21YS21S-4 | 3068889 | Bacteria | Bacteria | 556 | 5.31e-154 | NTclustered | gi|2565867660|gb|CP132719.1| | 3068889 | g5827 | i0 | 97.538 | 244.310769230769 | 325 | 8 | 100 | 0 | 1 | 325 | 151826 | 151502 | Geothrix sp. 21YS21S-4 chromosome, complete genome | blastn | 79401 | 556 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | Holophagae | Holophagales | Holophagaceae | Geothrix | Geothrix sp. 21YS21S-4 | ||
| 11859459 | 11859459 | PRJNA315314_S_NODE_19810_length_185_cov_669.224359_g19489_i0 | PRJNA315314 | 19810 | 185 | 669.224359 | 1238.06506415 | uncultured Acidobacteriota bacterium | 171953 | Bacteria | Bacteria | 172 | 1.16e-38 | NTclustered | gi|112980853|gb|DQ829657.1| | 171953 | g19489 | i0 | 83.511 | 179.475675675676 | 188 | 27 | 100 | 4 | 1 | 185 | 382 | 196 | Uncultured Acidobacteria bacterium clone DON33 23S ribosomal RNA gene, partial sequence | blastn | 33203 | 172 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | uncultured Acidobacteriota bacterium | ||||||
| 11859708 | 11859708 | PRJNA315314_S_NODE_6070_length_327_cov_353.506711_g5749_i0 | PRJNA315314 | 6070 | 327 | 353.506711 | 1155.96694497 | uncultured Acidobacteriota bacterium | 171953 | Bacteria | Bacteria | 370 | 7.47e-98 | NTclustered | gi|217038917|gb|EU811008.1| | 171953 | g5749 | i0 | 87.195 | 187.100917431193 | 328 | 39 | 100 | 3 | 1 | 327 | 382 | 57 | Uncultured Acidobacteria bacterium clone 01QCW 23S ribosomal RNA gene, partial sequence | blastn | 61182 | 370 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | uncultured Acidobacteriota bacterium | ||||||
| 14409755 | 14409755 | PRJNA315314_S_NODE_2432_length_507_cov_14.585774_g2129_i0 | PRJNA315314 | 2432 | 507 | 14.585774 | 73.94987418 | uncultured Acidobacteriota bacterium | 171953 | Bacteria | Bacteria | 488 | 3.1899999999999996e-133 | NTclustered | gi|2874254027|emb|OY970352.1| | 171953 | g2129 | i0 | 84.54 | 243.364891518738 | 511 | 59 | 99 | 16 | 3 | 507 | 2366660 | 2367156 | MAG: uncultured Acidobacteriota bacterium isolate MFD01916.bin.c.5 genome assembly, chromosome: 1 | blastn | 123386 | 488 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | uncultured Acidobacteriota bacterium | ||||||
| 15092962 | 15092962 | PRJNA315314_S_NODE_14092_length_217_cov_8.239362_g13771_i0 | PRJNA315314 | 14092 | 217 | 8.239362 | 17.87941554 | Holophagaceae | 574976 | Bacteria | Bacteria | 346 | 7.85e-91 | NTclustered | gi|84452196|emb|AM180894.1| | 44676 | g13771 | i0 | 95.392 | 236.087557603687 | 217 | 10 | 100 | 0 | 1 | 217 | 1167 | 951 | Geothrix fermentans partial 23S rRNA gene, strain DSM 14018 | blastn | 51231 | 346 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | Holophagae | Holophagales | Holophagaceae | Geothrix | Geothrix fermentans | ||
| 16367893 | 16367893 | PRJNA315314_S_NODE_2953_length_460_cov_9.185615_g2636_i0 | PRJNA315314 | 2953 | 460 | 9.185615 | 42.253829 | Holophaga | 35838 | Bacteria | Bacteria | 427 | 6.349999999999998e-115 | NTclustered | gi|84452201|emb|AM180899.1| | 171953 | g2636 | i0 | 83.582 | 282.930434782609 | 469 | 64 | 99 | 9 | 1 | 458 | 1260 | 1726 | Uncultured Acidobacteria bacterium partial 23S rRNA gene, clone LS_LKC11_kan2 | blastn | 130148 | 427 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | uncultured Acidobacteriota bacterium | ||||||
| 16958522 | 16958522 | PRJNA315314_S_NODE_9954_length_256_cov_81.414097_g9633_i0 | PRJNA315314 | 9954 | 256 | 81.414097 | 208.42008832 | uncultured Acidobacteriota bacterium | 171953 | Bacteria | Bacteria | 246 | 9.95e-61 | NTclustered | gi|2874253677|emb|OY969111.1| | 171953 | g9633 | i0 | 85.656 | 168.4921875 | 244 | 23 | 93 | 11 | 19 | 256 | 716223 | 715986 | MAG: uncultured Acidobacteriota bacterium isolate MFD01916.bin.c.3 genome assembly, chromosome: 1 | blastn | 43134 | 246 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | uncultured Acidobacteriota bacterium | ||||||
| 20782264 | 20782264 | PRJNA315314_S_NODE_17777_length_195_cov_4.156627_g17456_i0 | PRJNA315314 | 17777 | 195 | 4.156627 | 8.10542265 | uncultured Acidobacteriota bacterium | 171953 | Bacteria | Bacteria | 167 | 5.7699999999999995e-37 | NTclustered | gi|31789464|gb|AY281356.1| | 171953 | g17456 | i0 | 95.238 | 268.805128205128 | 105 | 5 | 54 | 0 | 91 | 195 | 10686 | 10790 | Uncultured Acidobacteria bacterium clone 41b15 genomic sequence | blastn | 52417 | 167 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | uncultured Acidobacteriota bacterium | ||||||
| 20782568 | 20782568 | PRJNA315314_S_NODE_6377_length_319_cov_18.141379_g6056_i0 | PRJNA315314 | 6377 | 319 | 18.141379 | 57.87099901 | uncultured Acidobacteriaceae bacterium | 194844 | Bacteria | Bacteria | 455 | 1.95e-123 | NTclustered | gi|192805573|emb|FM176375.1| | 194844 | g6056 | i0 | 92.476 | 98.5862068965517 | 319 | 22 | 99 | 2 | 1 | 318 | 318 | 1 | Uncultured Acidobacteriaceae bacterium partial 16S rRNA gene, clone CL5.H127 | blastn | 31449 | 455 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | Terriglobia | Terriglobales | Acidobacteriaceae | uncultured Acidobacteriaceae bacterium | |||
| 22742062 | 22742062 | PRJNA315314_S_NODE_13418_length_222_cov_20.989637_g13097_i0 | PRJNA315314 | 13418 | 222 | 20.989637 | 46.59699414 | Bacteria | 2 | Bacteria | Bacteria | 220 | 5.099999999999999e-53 | NTclustered | gi|1958085512|gb|CP065000.1| | 1978231 | g13097 | i0 | 85.068 | 81.2792792792793 | 221 | 27 | 99 | 6 | 1 | 219 | 3298696 | 3298912 | Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.078_cln chromosome, complete genome | blastn | 18044 | 222 | 0.990990990990991 | Bacteria | Pseudomonadati | Acidobacteriota | Acidobacteriota bacterium | ||||||
| 22742208 | 22742208 | PRJNA315314_S_NODE_6418_length_318_cov_29.965398_g6097_i0 | PRJNA315314 | 6418 | 318 | 29.965398 | 95.28996564 | Bacteria | 2 | Bacteria | Bacteria | 394 | 4.3e-105 | NTclustered | gi|2874254027|emb|OY970352.1| | 171953 | g6097 | i0 | 89.241 | 616.474842767296 | 316 | 33 | 99 | 1 | 4 | 318 | 2367342 | 2367657 | MAG: uncultured Acidobacteriota bacterium isolate MFD01916.bin.c.5 genome assembly, chromosome: 1 | blastn | 196039 | 394 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | uncultured Acidobacteriota bacterium | ||||||
| 23332823 | 23332823 | PRJNA315314_S_NODE_21039_length_180_cov_27.947020_g20718_i0 | PRJNA315314 | 21039 | 180 | 27.94702 | 50.304636 | Acidobacteriota bacterium | 1978231 | Bacteria | Bacteria | 215 | 1.84e-51 | NTclustered | gi|1958098837|gb|CP065005.1| | 1978231 | g20718 | i0 | 89.655 | 62.75 | 174 | 10 | 93 | 6 | 1 | 168 | 4649790 | 4649961 | Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.198_cln chromosome, complete genome | blastn | 11295 | 215 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | Acidobacteriota bacterium | ||||||
| 24017120 | 24017120 | PRJNA315314_S_NODE_17359_length_197_cov_6.660714_g17038_i0 | PRJNA315314 | 17359 | 197 | 6.660714 | 13.12160658 | Bacteria | 2 | Bacteria | Bacteria | 211 | 2.66e-50 | NTclustered | gi|2874254061|emb|OY970385.1| | 2026791 | g17038 | i0 | 91.026 | 67.6446700507614 | 156 | 14 | 79 | 0 | 2 | 157 | 2774634 | 2774479 | MAG: Bryobacterales bacterium isolate MFD03726.bin.c.1 genome assembly, chromosome: 1 | blastn | 13326 | 213 | 0.990610328638498 | Bacteria | Pseudomonadati | Acidobacteriota | Terriglobia | Bryobacterales | Bryobacterales bacterium |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;