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contig_metadata

21 rows where analysis = "blastn", bioproject = "PRJNA315314" and tax_kingdom = "Orthornavirae"

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tax_superkingdom 1

tax_kingdom 1

  • Orthornavirae · 21 ✖

bioproject 1

  • PRJNA315314 · 21 ✖

analysis 1

  • blastn · 21 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1655449 1655449 PRJNA315314_S_NODE_13202_length_224_cov_4.230769_g12881_i0 PRJNA315314 13202 224 4.230769 9.47692256 Betacoronavirus pandemicum 3418604 Viruses Viruses 52.8 0.02   NTclustered gi|2557638132|emb|OY695180.1| 2697049 g12881 i0 100 0.125 28 0 13 0 1 28 20057 20030 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 28 52.8 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
2931312 2931312 PRJNA315314_S_NODE_13283_length_223_cov_3938.922680_g12962_i0 PRJNA315314 13283 223 3938.92268 8783.7975764 Betacoronavirus pandemicum 3418604 Viruses Viruses 71.3 5.47e-8   NTclustered gi|2557654415|emb|OY684664.1| 2697049 g12962 i0 100 19.3004484304933 38 0 17 0 186 223 21929 21966 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 4304 71.3 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
2931639 2931639 PRJNA315314_S_NODE_4423_length_380_cov_138.470085_g4102_i0 PRJNA315314 4423 380 138.470085 526.186323 Betacoronavirus pandemicum 3418604 Viruses Viruses 117 1.27e-21   NTclustered gi|2165835007|emb|OV196275.1| 2697049 g4102 i0 94.805 11.6078947368421 77 1 19 2 21 94 121 197 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 4411 117 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
4207887 4207887 PRJNA315314_S_NODE_14484_length_214_cov_4042.210811_g14163_i0 PRJNA315314 14484 214 4042.210811 8650.33113554 Betacoronavirus pandemicum 3418604 Viruses Viruses 73.1 1.45e-8   NTclustered gi|2557654279|emb|OY684629.1| 2697049 g14163 i0 100 20.1355140186916 39 0 18 0 1 39 26153 26115 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 4309 73.1 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
4207987 4207987 PRJNA315314_S_NODE_19804_length_185_cov_4818.333333_g19483_i0 PRJNA315314 19804 185 4818.333333 8913.91666605 Betacoronavirus pandemicum 3418604 Viruses Viruses 69.4 1.57e-7   NTclustered gi|2565365187|emb|OY637518.1| 2697049 g19483 i0 100 23.2 37 0 20 0 1 37 11670 11634 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 4292 69.4 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
5484227 5484227 PRJNA315314_S_NODE_1705_length_596_cov_109.925926_g1366_i1 PRJNA315314 1705 596 109.925926 655.15851896 Betacoronavirus pandemicum 3418604 Viruses Viruses 117 2.06e-21   NTclustered gi|2165835007|emb|OV196275.1| 2697049 g1366 i1 94.805 7.05872483221477 77 1 12 2 21 94 121 197 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 4207 117 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
5484430 5484430 PRJNA315314_S_NODE_30265_length_154_cov_3.304000_g29944_i0 PRJNA315314 30265 154 3.304 5.08816 Ripothoz virus 3131336 Viruses Viruses 62.1 2.1e-5   NTclustered gi|2717322249|gb|PP173638.1| 3131336 g29944 i0 97.222 0.233766233766234 36 1 23 0 80 115 5236 5201 MAG: Ripothoz virus isolate MP3_k141_314104 genomic sequence blastn 36 62.1 1 Viruses   Orthornavirae Kitrinoviricota Magsaviricetes Nodamuvirales     Ripothoz virus
7443247 7443247 PRJNA315314_S_NODE_3046_length_454_cov_1564.717647_g2728_i0 PRJNA315314 3046 454 1564.717647 7103.81811738 Pisoniviricetes 2732506 Viruses Viruses 69.4 4.37e-7   NTclustered gi|2167415105|tpg|BK059322.1| 12271 g2728 i0 100 8.85462555066079 37 0 8 0 1 37 6 42 TPA_asm: Arabis mosaic virus isolate SRR5788585_ArMV segment RNA1, complete sequence blastn 4020 69.4 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Secoviridae Nepovirus Nepovirus arabis
8033995 8033995 PRJNA315314_S_NODE_1627_length_608_cov_111.143351_g1366_i0 PRJNA315314 1627 608 111.143351 675.75157408 Betacoronavirus pandemicum 3418604 Viruses Viruses 117 2.11e-21   NTclustered gi|2165835007|emb|OV196275.1| 2697049 g1366 i0 94.805 6.91940789473684 77 1 12 2 515 588 197 121 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 4207 117 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
10584848 10584848 PRJNA315314_S_NODE_4729_length_368_cov_2248.592920_g4408_i0 PRJNA315314 4729 368 2248.59292 8274.8219456 Betacoronavirus pandemicum 3418604 Viruses Viruses 71.3 9.65e-8   NTclustered gi|2557652486|emb|OY682391.1| 2697049 g4408 i0 100 11.7771739130435 38 0 11 0 1 38 11279 11242 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 4334 71.3 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
10584920 10584920 PRJNA315314_S_NODE_7869_length_287_cov_2926.693798_g7548_i0 PRJNA315314 7869 287 2926.693798 8399.61120026 Betacoronavirus pandemicum 3418604 Viruses Viruses 71.3 7.33e-8   NTclustered gi|2557652486|emb|OY682391.1| 2697049 g7548 i0 100 14.9059233449477 38 0 13 0 250 287 11242 11279 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 4278 71.3 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
11859468 11859468 PRJNA315314_S_NODE_2030_length_547_cov_1407.843629_g1747_i0 PRJNA315314 2030 547 1407.843629 7700.90465063 Betacoronavirus pandemicum 3418604 Viruses Viruses 69.4 5.34e-7   NTclustered gi|2557641183|emb|OY671812.1| 2697049 g1747 i0 97.5 7.72577696526508 40 1 7 0 1 40 16459 16420 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 4226 69.4 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
12543885 12543885 PRJNA315314_S_NODE_7490_length_294_cov_2820.233962_g7169_i0 PRJNA315314 7490 294 2820.233962 8291.48784828 Viruses 10239 Viruses Viruses 71.3 7.53e-8   NTclustered gi|2557389902|emb|OY653400.1| 2697049 g7169 i0 100 14.7755102040816 38 0 13 0 257 294 19645 19682 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 4344 71.3 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
15683268 15683268 PRJNA315314_S_NODE_10533_length_249_cov_3422.527273_g10212_i0 PRJNA315314 10533 249 3422.527273 8522.09290977 Betacoronavirus pandemicum 3418604 Viruses Viruses 69.4 2.24e-7   NTclustered gi|2565365187|emb|OY637518.1| 2697049 g10212 i0 100 17.6506024096386 37 0 15 0 213 249 11634 11670 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 4395 69.4 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
16367784 16367784 PRJNA315314_S_NODE_14053_length_217_cov_3948.760638_g13732_i0 PRJNA315314 14053 217 3948.760638 8568.81058446 Viruses 10239 Viruses Viruses 71.3 5.29e-8   NTclustered gi|2557389902|emb|OY653400.1| 2697049 g13732 i0 100 20.0230414746544 38 0 18 0 1 38 19682 19645 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 4345 71.3 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
16958429 16958429 PRJNA315314_S_NODE_5874_length_332_cov_2469.039604_g5553_i0 PRJNA315314 5874 332 2469.039604 8197.21148528 Betacoronavirus pandemicum 3418604 Viruses Viruses 75 6.67e-9   NTclustered gi|2174999023|emb|OV377758.1| 2697049 g5553 i0 100 13.0632530120482 40 0 12 0 293 332 129 90 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 4337 75 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
20782370 20782370 PRJNA315314_S_NODE_23717_length_171_cov_6.267606_g23396_i0 PRJNA315314 23717 171 6.267606 10.71760626 Sopafab virus 3131770 Viruses Viruses 119 1.39e-22   NTclustered gi|2717323354|gb|PP174071.1| 3131770 g23396 i0 79.891 46.6432748538012 184 20 98 11 4 171 310 128 MAG: Sopafab virus isolate SP1C_k141_220867 genomic sequence blastn 7976 119 1 Viruses   Orthornavirae Lenarviricota Amabiliviricetes       Sopafab virus
22057559 22057559 PRJNA315314_S_NODE_7498_length_294_cov_37.449057_g7177_i0 PRJNA315314 7498 294 37.449057 110.10022758 Chrocagost virus 3129398 Viruses Viruses 244 4.1899999999999996e-60   NTclustered gi|2717317482|gb|PP171846.1| 3129398 g7177 i0 88.235 156.666666666667 204 24 69 0 7 210 5659 5862 MAG: Chrocagost virus isolate CC1A_k141_84256 genomic sequence blastn 46060 244 1 Viruses   Orthornavirae Lenarviricota Amabiliviricetes       Chrocagost virus
24607086 24607086 PRJNA315314_S_NODE_3560_length_422_cov_1851.017812_g3240_i0 PRJNA315314 3560 422 1851.017812 7811.29516664 Betacoronavirus pandemicum 3418604 Viruses Viruses 69.4 4.04e-7   NTclustered gi|2565352131|emb|OY625234.1| 2697049 g3240 i0 100 9.91232227488152 37 0 9 0 1 37 23719 23683 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 4183 69.4 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
24607197 24607197 PRJNA315314_S_NODE_8500_length_277_cov_185.935484_g8179_i0 PRJNA315314 8500 277 185.935484 515.04129068 Betacoronavirus pandemicum 3418604 Viruses Viruses 117 8.91e-22   NTclustered gi|2165835007|emb|OV196275.1| 2697049 g8179 i0 94.805 15.8050541516245 77 1 27 2 21 94 121 197 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 4378 117 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
24607216 24607216 PRJNA315314_S_NODE_9220_length_266_cov_2991.050633_g8899_i0 PRJNA315314 9220 266 2991.050633 7956.19468378 Betacoronavirus pandemicum 3418604 Viruses Viruses 69.4 2.42e-7   NTclustered gi|2557639802|emb|OY695838.1| 2697049 g8899 i0 97.5 15.4548872180451 40 1 15 0 227 266 4716 4755 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 4111 69.4 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;