RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA315314" and tax_kingdom = "Methanobacteriati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Methanobacteriati · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA315314 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
380796 380796 PRJNA315314_S_NODE_19421_length_187_cov_4.044304_g19100_i0 PRJNA315314 19421 187 4.044304 7.56284848 Halococcus qingdaonensis 224402 Archaea Archaea 285 1.45e-72   NTclustered gi|2281256326|gb|CP101943.1| 224402 g19100 i0 97.041 155.299465240642 169 5 90 0 19 187 2645218 2645050 Halococcus qingdaonensis strain CGMCC 1.4243 chromosome, complete genome blastn 29041 285 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halococcus Halococcus qingdaonensis
9309007 9309007 PRJNA315314_S_NODE_4008_length_399_cov_3.956757_g3687_i0 PRJNA315314 4008 399 3.956757 15.78746043 uncultured marine group II/III euryarchaeote KM3_139_C07 1457870 Archaea Archaea 52.8 0.038   NTclustered gi|663510147|gb|KF900602.1| 1457870 g3687 i0 100 0.0701754385964912 28 0 7 0 135 162 28594 28567 Uncultured marine group II/III euryarchaeote KM3_139_C07 genomic sequence blastn 28 52.8 1 Archaea   Methanobacteriati Methanobacteriota         uncultured marine group II/III euryarchaeote KM3_139_C07
21467120 21467120 PRJNA315314_S_NODE_30257_length_154_cov_3.424000_g29936_i0 PRJNA315314 30257 154 3.424 5.27296 Halococcus 2249 Archaea Archaea 285 1.14e-72   NTclustered gi|43626|emb|X05481.1| 2250 g29936 i0 100 168 154 0 100 0 1 154 2118 1965 Halococcus morrhuae 23S ribosomal RNA blastn 25872 285 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halococcus Halococcus morrhuae

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;