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contig_metadata

9 rows where analysis = "blastn", bioproject = "PRJNA315314" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 9 ✖

bioproject 1

  • PRJNA315314 · 9 ✖

analysis 1

  • blastn · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1065389 1065389 PRJNA315314_S_NODE_3901_length_404_cov_5.293333_g3580_i0 PRJNA315314 3901 404 5.293333 21.38506532 Chlorellaceae 35461 Plants Plants 78.7 6.39e-10   NTclustered gi|741870561|ref|NC_026009.1| 3075 g3580 i0 90 0.923267326732673 60 6 15 0 144 203 32383 32324 Auxenochlorella protothecoides mitochondrion, complete genome blastn 373 78.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
2931677 2931677 PRJNA315314_S_NODE_6383_length_319_cov_8.675862_g6062_i0 PRJNA315314 6383 319 8.675862 27.67599978 Marsupiomonas pelliculata 1034818 Plants Plants 196 1.31e-45   NTclustered gi|371782105|emb|HE610137.1| 1034818 g6062 i0 81.481 81.012539184953 243 41 76 4 78 319 2441 2202 Marsupiomonas pelliculata partial 28S rRNA gene, strain PLY 441 blastn 25843 196 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Pedinophyceae Marsupiomonadales Marsupiomonadaceae Marsupiomonas Marsupiomonas pelliculata
4893069 4893069 PRJNA315314_S_NODE_11464_length_239_cov_135.009524_g11143_i0 PRJNA315314 11464 239 135.009524 322.67276236 Chlamydomonas 3052 Plants Plants 414 2.38e-111   NTclustered gi|167047969|gb|EU410621.1| 3055 g11143 i0 97.908 100.28870292887 239 5 100 0 1 239 1924 1686 Chlamydomonas reinhardtii 26S ribosomal RNA gene, partial sequence blastn 23969 414 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
4893197 4893197 PRJNA315314_S_NODE_31684_length_151_cov_16.811475_g31363_i0 PRJNA315314 31684 151 16.811475 25.38532725 Choricystis 41299 Plants Plants 128 1.9899999999999999e-25   NTclustered gi|328349685|emb|FN298929.1| 41300 g31363 i0 93.103 76.6225165562914 87 6 58 0 65 151 2192 2106 Choricystis sp. TP-2009 18S rRNA gene (partial), ITS1, 5.8S rRNA gene, ITS2 and 28S rRNA gene (partial), strain SAG 211-40c blastn 11570 128 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae     Choricystis Choricystis parasitica
6168136 6168136 PRJNA315314_S_NODE_25305_length_166_cov_16.408759_g24984_i0 PRJNA315314 25305 166 16.408759 27.23853994 Chlamydomonas 3052 Plants Plants 307 2.69e-79   NTclustered gi|422779560|gb|JX839535.1| 3055 g24984 i0 100 98.7530120481928 166 0 100 0 1 166 481 316 Chlamydomonas reinhardtii strain CC-621 28S ribosomal RNA gene, partial sequence blastn 16393 307 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
7443191 7443191 PRJNA315314_S_NODE_20566_length_182_cov_8.228758_g20245_i0 PRJNA315314 20566 182 8.228758 14.97633956 Eukaryota 2759 Plants Plants 60.2 9.25e-5   NTclustered gi|2306645722|gb|OK189530.1| 121088 g20245 i0 94.872 7.26373626373626 39 1 21 1 19 56 66846 66808 Ostreobium quekettii voucher Chloroplast genome chloroplast, complete genome blastn 1322 60.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Ostreobiaceae Ostreobium Ostreobium quekettii
18232471 18232471 PRJNA315314_S_NODE_21115_length_180_cov_3.509934_g20794_i0 PRJNA315314 21115 180 3.509934 6.3178812 Chlorosarcinopsis eremi 332213 Plants Plants 82.4 1.95e-11   NTclustered gi|1642525901|ref|NC_042250.1| 332213 g20794 i0 83.333 2.06666666666667 90 13 53 2 65 154 131318 131405 Chlorosarcinopsis eremi culture UTEX:1186 chloroplast, complete genome blastn 372 82.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlorosarcinales Chlorosarcinaceae Chlorosarcinopsis Chlorosarcinopsis eremi
22057311 22057311 PRJNA315314_S_NODE_2178_length_534_cov_3.516832_g1887_i0 PRJNA315314 2178 534 3.516832 18.77988288 Chlamydomonas reinhardtii 3055 Plants Plants 324 1.01e-83   NTclustered gi|2082248650|ref|XM_043063418.1| 3055 g1887 i0 77.944 84.6910112359551 535 106 99 11 1 529 329 857 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_06g290950v5), mRNA blastn 45225 324 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
23332886 23332886 PRJNA315314_S_NODE_24619_length_168_cov_393.834532_g24298_i0 PRJNA315314 24619 168 393.834532 661.64201376 Haematococcus lacustris 44745 Plants Plants 248 1.68e-61   NTclustered gi|1279575454|gb|MF683078.1| 44745 g24298 i0 93.452 288.291666666667 168 9 100 2 1 168 3634 3799 Haematococcus lacustris 16S ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence; chloroplast blastn 48433 248 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Haematococcus Haematococcus lacustris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;