RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA315314" and tax_clade = "Metamonada"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Metamonada · 4 ✖

bioproject 1

  • PRJNA315314 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9308972 9308972 PRJNA315314_S_NODE_31708_length_151_cov_7.983607_g31387_i0 PRJNA315314 31708 151 7.983607 12.05524657 Oxymonas sp. Glx478OxA 2580153 Preaxostyla other_Eukaryota 99 1.56e-16   NTclustered gi|1653342969|gb|MK937355.1| 2580153 g31387 i0 96.61 42.5562913907285 59 2 39 0 1 59 1603 1661 Oxymonas sp. Glx478OxA clone Glx478_Ox2 small subunit ribosomal RNA gene, partial sequence blastn 6426 99 1 Eukaryota Metamonada   Preaxostyla   Oxymonadida Oxymonadidae Oxymonas Oxymonas sp. Glx478OxA
13134613 13134613 PRJNA315314_S_NODE_26791_length_162_cov_5.541353_g26470_i0 PRJNA315314 26791 162 5.541353 8.97699186 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 65.8 1.73e-6   NTclustered gi|2319615616|ref|XR_007835995.1| 412133 g26470 i0 90.385 1.43827160493827 52 2 31 3 38 88 2561 2610 Trichomonas vaginalis G3 23S ribosomal RNA (TVAGG3_0034210), rRNA blastn 233 65.8 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
22057156 22057156 PRJNA315314_S_NODE_13438_length_222_cov_5.886010_g13117_i0 PRJNA315314 13438 222 5.88601 13.0669422 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 60.2 1.18e-4   NTclustered gi|2319615600|ref|XR_007835979.1| 412133 g13117 i0 97.143 0.945945945945946 35 1 16 0 15 49 2540 2574 Trichomonas vaginalis G3 23S ribosomal RNA (TVAGG3_0034050), rRNA blastn 210 60.2 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
22057469 22057469 PRJNA315314_S_NODE_4038_length_397_cov_23.945652_g3717_i0 PRJNA315314 4038 397 23.945652 95.06423844 Holomastigotes sp. 3086161 Parabasalia other_Eukaryota 56.5 0.003   NTclustered gi|2637867513|gb|OR995878.1| 3086161 g3717 i0 96.97 0.324937027707809 33 1 8 0 115 147 2853 2885 Holomastigotes sp. clone Hsjo_Para28S_sq46sz39 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 129 56.5 1 Eukaryota Metamonada   Parabasalia   Spirotrichonymphida Holomastigotoididae Holomastigotes Holomastigotes sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;